COMUNET
Cell analysis tool
An exploratory tool for analyzing intercellular communication from single-cell transcriptional data.
COMUNET: a tool to explore and visualize intercellular communication
12 stars
4 watching
10 forks
Language: Jupyter Notebook
last commit: over 4 years ago
Linked from 1 awesome list
seandavi/awesome-single-cellRelated projects:
| Repository | Description | Stars |
|---|---|---|
 compbel/scifil | A computational tool for analyzing single cell sequencing data to infer fitness landscapes of cancer cell populations. | 5 |
 jiekailab/scte | A tool for analyzing single-cell sequencing data to quantify transposable element expression. | 102 |
 cabsel/calista | Analyzes single cell expression data to infer cellular lineages and clustering structures | 9 |
 cantinilab/scprint | An open-source software framework for analyzing single-cell RNA sequencing data and predicting gene networks | 22 |
 angelolab/ark-analysis | A toolset for analyzing multiplexed imaging data by applying various machine learning and image processing techniques to segment cells, cluster pixels, and perform spatial analysis. | 76 |
 martaint/intercellar | An interactive R/Shiny app for analyzing cell-cell communication from single-cell transcriptomics data | 9 |
 xmc811/scillus | A package for processing and visualizing single-cell RNA-seq data in R, providing an efficient and customizable framework for analyzing complex biological datasets. | 53 |
 cellgeni/scrna.seq.course | An educational resource teaching computational analysis of single-cell RNA-seq data using R and Bioconductor tools | 123 |
 asncd/mimosca | A tool for designing and analyzing pooled single cell RNA-seq perturbation experiments to understand biological dynamics | 85 |
 eiriniar/cellcnn | A Python-based software framework for analyzing mass/flow cytometry data to identify phenotype-associated cell subsets. | 65 |
 kharchenkolab/numbat | Analyzes single-cell RNA-seq data to detect allele-specific copy number variations and infer lineage relationships in cancer cells | 166 |
 euxhenh/cellar | An interactive software tool for analyzing single-cell omics data | 31 |
 robertaboukhalil/ginkgo | An analysis tool for single-cell copy-number variation data from sequencing experiments. | 47 |
 cbg-ethz/scicone | A software tool for analyzing single-cell DNA sequencing data to reconstruct copy number events and cell histories in cancer research. | 20 |
 chenmengjie/citrus | An R/C++ toolkit for single cell sequencing analysis with normalization and clustering methods | 3 |