COMUNET

Cell analysis tool

An exploratory tool for analyzing intercellular communication from single-cell transcriptional data.

COMUNET: a tool to explore and visualize intercellular communication

GitHub

12 stars
4 watching
10 forks
Language: Jupyter Notebook
last commit: over 6 years ago
Linked from 1 awesome list


Backlinks from these awesome lists:

Related projects:

RepositoryDescriptionStars
compbel/scifilA computational tool for analyzing single cell sequencing data to infer fitness landscapes of cancer cell populations.5
jiekailab/scteA tool for analyzing single-cell sequencing data to quantify transposable element expression.102
cabsel/calistaAnalyzes single cell expression data to infer cellular lineages and clustering structures9
cantinilab/scprintAn open-source software framework for analyzing single-cell RNA sequencing data and predicting gene networks35
angelolab/ark-analysisA toolset for analyzing multiplexed imaging data by applying various machine learning and image processing techniques to segment cells, cluster pixels, and perform spatial analysis.78
martaint/intercellarAn interactive R/Shiny app for analyzing cell-cell communication from single-cell transcriptomics data9
xmc811/scillusA package for processing and visualizing single-cell RNA-seq data in R, providing an efficient and customizable framework for analyzing complex biological datasets.60
cellgeni/scrna.seq.courseAn educational resource teaching computational analysis of single-cell RNA-seq data using R and Bioconductor tools125
asncd/mimoscaA tool for designing and analyzing pooled single cell RNA-seq perturbation experiments to understand biological dynamics87
eiriniar/cellcnnA Python-based software framework for analyzing mass/flow cytometry data to identify phenotype-associated cell subsets.65
kharchenkolab/numbatAnalyzes single-cell RNA-seq data to detect allele-specific copy number variations and infer lineage relationships in cancer cells171
euxhenh/cellarAn interactive software tool for analyzing single-cell omics data32
robertaboukhalil/ginkgoAn analysis tool for single-cell copy-number variation data from sequencing experiments.47
cbg-ethz/sciconeA software tool for analyzing single-cell DNA sequencing data to reconstruct copy number events and cell histories in cancer research.20
chenmengjie/citrusA toolkit for single cell sequencing analysis with methods for normalization and clustering of RNA sequencing data.3