scTE
TE analyzer
A tool for analyzing single-cell sequencing data to quantify transposable element expression.
102 stars
4 watching
28 forks
Language: Jupyter Notebook
last commit: 7 months ago
Linked from 1 awesome list
Related projects:
Repository | Description | Stars |
---|---|---|
zji90/scate | Provides a statistical framework for analyzing genome-wide regulatory landscape in single cells using scATAC-seq data | 9 |
scialdonelab/comunet | An exploratory tool for analyzing intercellular communication from single-cell transcriptional data. | 12 |
yoseflab/trapes | Algorithmic software for analyzing single-cell RNA sequencing data to reconstruct T cell receptor sequences. | 14 |
rabadanlab/sctda | An object-oriented Python library for analyzing single-cell RNA-seq data using topological representations | 7 |
jamesjcai/scgeatoolbox | A toolset for analyzing single-cell gene expression data from RNA sequencing experiments. | 24 |
elementolab/sctcrseq | Recovering TCR sequences from single-cell RNA-seq data using a Python pipeline | 26 |
johtani/analyze-api-ui-plugin | An Elasticsearch plugin that provides a user interface for analyzing text with the Analyzer. | 109 |
jhu99/scbean | Analyzes single-cell multi-omics data from various modalities like RNA-seq and ATAC-seq | 16 |
teichlab/spatialde | Tools and methods to analyze gene expression data in relation to spatial coordinates | 145 |
hms-dbmi/scde | Provides statistical methods for analyzing single-cell RNA-seq data, focusing on error modeling and differential expression analysis. | 173 |
timoast/sinto | Tools for analyzing aligned single-cell data from sequencing experiments | 118 |
scrna-seq/tasc | A toolkit for analyzing single-cell RNA sequencing data using computational methods and algorithms | 2 |
flatt-security/shisho | A tool that analyzes code for security vulnerabilities and provides feedback to developers | 371 |
dawe/schist | An interface to perform nested stochastic block model analysis on single-cell data using graph-tool methods. | 32 |
ikeikeikeike/exkanji | A morphological analyzer and translator library for Japanese text | 13 |