mutect-nf

Variant caller

A Nextflow-based pipeline for somatic variant calling using mutect

Mutect pipeline with Nextflow

GitHub

9 stars
5 watching
7 forks
Language: Nextflow
last commit: over 2 years ago
Linked from 1 awesome list

mutectnextflow

Backlinks from these awesome lists:

Related projects:

RepositoryDescriptionStars
iarcbioinfo/needlestackAn ultra-sensitive multi-sample variant caller for NGS data50
crg-cnag/callings-nfA Nextflow pipeline for RNA sequencing variant calling with GATK best practices132
iarcbioinfo/gatk4-genotypegvcfs-nfJoint calling of genotype variants from multiple cohorts using GATK4 best practices12
iarcbioinfo/iarc-nfProvides a collection of pre-configured bioinformatics pipelines and tools for analyzing next-generation sequencing data.48
nextflow-io/nf-hack17An initiative to develop and showcase Nextflow-based pipelines for bioinformatics analysis10
nmdp-bioinformatics/flowConsensus assembly and variant calling workflow utilizing Nextflow for efficient processing of biological data12
nextflow-io/rnaseq-nfA pipeline for quantifying genomic features from short read data using Nextflow and various software components.74
iarcbioinfo/gvcf_pipeline-nfGenerates GVCF from BAM files using GenomeAnalysisTK with realignment and recalibration steps4
iarcbioinfo/bametrics-nfTools for computing average metrics from reads overlapping given positions1
nextflow-io/crg-course-nov16A tutorial project on using Nextflow and Docker for implementing a RNA-Seq pipeline23
iarcbioinfo/mpileup-nfComputation pipeline for calculating genomic coverage from sequencing data using samtools mpileup1
nf-core/sarekA workflow designed to detect germline and somatic variants from WGS and targeted sequencing data using bioinformatics tools.412
nf-core/viralreconAn assembly and variant calling pipeline for viral samples128
nf-core/smrnaseqAn automated analysis pipeline for small RNA sequencing data74
nextflow-io/vscode-language-nextflowProvides language support and features for a workflow scripting language in a popular integrated development environment.32