chipimputation

Imputation workflow

An imputation workflow tool for genomics data analysis

Genotype Imputation Pipeline for H3Africa

GitHub

20 stars
11 watching
20 forks
Language: Nextflow
last commit: 17 days ago
Linked from 1 awesome list

bioinformatics-pipelineimputationnextflow

Backlinks from these awesome lists:

Related projects:

Repository Description Stars
insilicodb/snp-imputation-nf A portable and scalable pipeline for imputing missing single nucleotide polymorphism (SNP) data in genetic studies. 1
h3abionet/h3agwas A comprehensive human genome-wide association study workflow for data quality control and basic association testing. 106
nf-core/hlatyping An analysis pipeline for HLA typing from next-generation sequencing data using integer linear programming and Nextflow 63
nextflow-io/nf-hack17 An initiative to develop and showcase Nextflow-based pipelines for bioinformatics analysis 10
iarcbioinfo/mpileup-nf Computation pipeline for calculating genomic coverage from sequencing data using samtools mpileup 1
hmkim/workflow A Nextflow-based bioinformatics workflow framework providing tools and examples for automating computational workflows in life sciences research 9
zuberlab/crispr-process-nf Tools for processing CRISPR and shRNA data in a high-throughput screening workflow 3
nf-core/chipseq A bioinformatics analysis pipeline for processing ChIP-seq data 194
crickbabs/babs-adnaseq A Nextflow pipeline script for processing ancient DNA sequencing data. 2
iarcbioinfo/iarc-nf Provides a collection of pre-configured bioinformatics pipelines and tools for analyzing next-generation sequencing data. 47
nextflow-io/rnaseq-nf A pipeline for quantifying genomic features from short read data using Nextflow and various software components. 72
zwang-lab/g2s3 An imputation method that applies graph signal processing to extract gene structure from scRNA-seq data and recover true expression levels by borrowing information from adjacent genes. 3
nf-core/eager Analyzes ancient DNA sequencing data with tools and workflows optimized for reproducibility and scalability 148
bcbio/bcbio-nextgen A high-level configuration file drives parallel variant calling and analysis on sequencing data. 994
qbic-pipelines/icgc-featurecounts Automated pipeline for featureCounts on RNAseq BAM files from ICGC datasets 3