crispr-process-nf
Data processor
Tools for processing CRISPR and shRNA data in a high-throughput screening workflow
Process CRISPR and shRNA functional genetic screening data
3 stars
3 watching
1 forks
Language: Nextflow
last commit: about 1 month ago
Linked from 1 awesome list
bioinformaticscrispr-cas9nextflowshrnasingularity
Related projects:
Repository | Description | Stars |
---|---|---|
zuberlab/mageck-nf | Analyzes multiplexed CRISPR/shRNA Screens using statistical methods | 3 |
nf-core/smrnaseq | An automated analysis pipeline for small RNA sequencing data | 74 |
nf-core/chipseq | A bioinformatics analysis pipeline for processing ChIP-seq data | 194 |
nf-core/sarek | Automated workflow for detecting germline or somatic variants in genomic sequencing data | 409 |
nf-core/rnafusion | A bioinformatics pipeline for detecting and analyzing gene fusions from RNA sequencing data | 143 |
abreschi/shortrna-nf | A pipeline tool for processing short RNA-seq data from start to finish. | 3 |
nf-core/hlatyping | An analysis pipeline for HLA typing from next-generation sequencing data using integer linear programming and Nextflow | 63 |
nextflow-io/nf-hack17 | An initiative to develop and showcase Nextflow-based pipelines for bioinformatics analysis | 10 |
nf-core/rnaseq | An RNA sequencing analysis pipeline that performs quality control, trimming, alignment, and quantification of gene expression from raw sequencing data. | 916 |
nf-core/tools | Provides a set of reusable Python functions and tools for bioinformatics and workflow management. | 242 |
nmdp-bioinformatics/flow | Consensus assembly and variant calling workflow utilizing Nextflow for efficient processing of biological data | 12 |
nextflow-io/nf-hack17-tutorial | A tutorial project providing hands-on experience with Nextflow and bioinformatics pipelines | 32 |
nf-core/eager | Analyzes ancient DNA sequencing data with tools and workflows optimized for reproducibility and scalability | 148 |
lingfeiwang/normalisr | A software framework for analyzing single-cell RNA sequencing data | 18 |
biocorecrg/mop2 | A Nextflow-based workflow for processing and analyzing nanopore RNA sequencing data | 23 |