needlestack
by IARCbioinfo
Multi-sample somatic variant caller
AI summary
Variant caller
An ultra-sensitive multi-sample variant caller for NGS data
- stars
- 50
- forks
- 15
- watching
- 11
- awesome list
- 1
Similar projects
Found by comparing what the projects do, not just their names.
Variant caller
A Nextflow-based pipeline for somatic variant calling using mutect
Variant caller
A Nextflow pipeline for RNA sequencing variant calling with GATK best practices
Haplotype caller
Automates the process of haplotype calling from genotyped BAM files using GATK4
Variant caller
Joint calling of genotype variants from multiple cohorts using GATK4 best practices
Variant detector
A workflow designed to detect germline and somatic variants from WGS and targeted sequencing data using bioinformatics tools.
NGS pipelines
Provides a collection of pre-configured bioinformatics pipelines and tools for analyzing next-generation sequencing data.
Seq analysis pipeline
A high-level configuration file drives parallel variant calling and analysis on sequencing data.
Variant detector
A Nextflow-based pipeline for detecting structural variants in whole-genome reads using the Cortex-Var algorithm.
Variant annotator
A tool that identifies and annotates genetic variants in single-cell RNA sequencing data by matching mutant and reference barcodes.
Genomic SV caller
An automation workflow for detecting structural variations in genomic data using the smoove toolset
Data Analysis Interface
Tool for integrated analysis of single-cell RNAseq data and immune receptor profiling data
Metrics calculator
Tools for computing average metrics from reads overlapping given positions
Genetic variation detector
An R package that uses Bayesian inference and hidden Markov models to detect genetic variations in single-cell RNA-seq data
Cell analysis software
Tools and methods for analyzing single-cell RNA sequencing data, including expression normalization and differential gene expression analysis.
Variant database library
Efficient storage and retrieval of genomic variant-call data using TileDB Embedded
Featured in 1 awesome list
Each link jumps to the spot where the list mentions needlestack.
