TileDB-VCF
Variant database library
Efficient storage and retrieval of genomic variant-call data using TileDB Embedded
Efficient variant-call data storage and retrieval library using the TileDB storage library.
89 stars
16 watching
16 forks
Language: C++
last commit: 14 days ago bioinformaticsdata-sciencegenomicsgwaspythonsparktiledbvariant-callingvcf
Related projects:
Repository | Description | Stars |
---|---|---|
tiledb-inc/tiledb-py | Provides a Python interface to store and manage large datasets in a distributed, columnar storage system. | 190 |
tiledb-inc/tiledb | A powerful storage engine for dense and sparse multi-dimensional arrays, providing efficient data modeling and access. | 1,866 |
tiledb-inc/tiledb-bioimaging | A Python package for efficiently storing and querying biomedical imaging data in TileDB arrays. | 16 |
tiledb-inc/tiledb-vector-search | A serverless, scale-out vector similarity search and storage system with efficient database capabilities | 53 |
tiledb-inc/tiledb-r | An R interface to the TileDB modern database | 103 |
tiledb-inc/tiledb-java | A Java interface to a distributed columnar storage engine | 26 |
tiledb-inc/tiledb-csharp | C# bindings for TileDB Embedded storage engine | 15 |
tiledb-inc/tiledb-go | A Go interface to TileDB's storage manager allowing data storage and retrieval in various formats. | 51 |
single-cell-data/tiledb-soma | Provides access to single-cell data at scale through a flexible, extensible API with storage and data access patterns | 92 |
vcdevel/vc | A C++ library for explicitly data-parallel programming on modern CPUs and GPUs. | 1,456 |
vanvalenlab/deepcell-tf | A deep learning library for analyzing biological images at the single-cell level | 424 |
iarcbioinfo/needlestack | An ultra-sensitive multi-sample variant caller for NGS data | 49 |
vcflib/vcflib | Provides methods to manipulate and interpret sequence variation described by the VCF format | 621 |
jamescasbon/pyvcf | A Python module for parsing variant call format files | 404 |
mknejp/dotvariant | A type-safe sum type library for C# that enables the creation of compact variants with compile-time checked constraints and generated interfaces. | 70 |