TileDB-VCF
Variant database library
Efficient storage and retrieval of genomic variant-call data using TileDB Embedded
Efficient variant-call data storage and retrieval library using the TileDB storage library.
90 stars
16 watching
16 forks
Language: C++
last commit: 3 months ago bioinformaticsdata-sciencegenomicsgwaspythonsparktiledbvariant-callingvcf
Related projects:
| Repository | Description | Stars |
|---|---|---|
| tiledb-inc/tiledb-py | Provides a Python interface to store and manage large datasets in a distributed, columnar storage system. | 190 |
| tiledb-inc/tiledb | A powerful storage engine for dense and sparse multi-dimensional arrays, providing efficient data modeling and access. | 1,878 |
| tiledb-inc/tiledb-bioimaging | A Python package for efficiently storing and querying biomedical imaging data in TileDB arrays. | 18 |
| tiledb-inc/tiledb-vector-search | A serverless, scale-out vector similarity search and storage system with efficient database capabilities | 54 |
| tiledb-inc/tiledb-r | Provides an interface to the modern database TileDB from R. | 103 |
| tiledb-inc/tiledb-java | A Java interface to a distributed columnar storage engine | 26 |
| tiledb-inc/tiledb-csharp | C# bindings for TileDB Embedded storage engine | 16 |
| tiledb-inc/tiledb-go | A Go interface to the TileDB storage manager | 51 |
 single-cell-data/tiledb-soma | Provides access to single-cell data at scale through a flexible, extensible API with storage and data access patterns | 95 |
 vcdevel/vc | A C++ library for explicitly data-parallel programming on modern CPUs and GPUs. | 1,461 |
 vanvalenlab/deepcell-tf | A deep learning library for analyzing biological images at the single-cell level | 431 |
 iarcbioinfo/needlestack | An ultra-sensitive multi-sample variant caller for NGS data | 50 |
 vcflib/vcflib | A C++ library and command-line tools for parsing, manipulating, and analyzing VCF files used in genomics and bioinformatics. | 628 |
 jamescasbon/pyvcf | A Python module for parsing variant call format files | 407 |
 mknejp/dotvariant | A type-safe sum type library for C# that enables the creation of compact variants with compile-time checked constraints and generated interfaces. | 70 |