zUMIs
UMI pipeline
A fast and flexible pipeline for processing RNA-seq data with UMIs
zUMIs: A fast and flexible pipeline to process RNA sequencing data with UMIs
275 stars
13 watching
68 forks
Language: R
last commit: 7 months ago
Linked from 1 awesome list
barcodesdgeexpressionfastqpipelinerna-seqrnaseqsingle-cellumi
Related projects:
Repository | Description | Stars |
---|---|---|
| A workflow for pre-processing single-cell RNA-seq data using Kallisto and Bustools. | 115 |
| A pre-processing workflow for SingleCell RNASeq data from raw sequencing data to final count matrix with QC plots. | 147 |
| An automated analysis pipeline for small RNA sequencing data | 74 |
| A pipeline tool for processing short RNA-seq data from start to finish. | 3 |
| A software pipeline for analyzing single-cell RNA-seq data from droplet-based experiments | 88 |
| A suite of functions for analyzing and visualizing RNA sequencing data | 191 |
| An educational tutorial and working demonstration pipeline for RNA-seq analysis on the cloud | 1,345 |
| A Nextflow pipeline script for processing ancient DNA sequencing data. | 2 |
| A Nextflow-based pipeline for processing RNA-Seq data using Docker containers | 4 |
| A data pipeline framework for processing Ion Torrent sequencing data | 2 |
| Provides tools and methods for visualizing and analyzing single cell RNA-seq data in low dimensions | 35 |
| A pipeline for quantifying genomic features from short read data using Nextflow and various software components. | 74 |
| A workflow generator for single-cell RNA-seq data analysis | 100 |
| A Nextflow pipeline for processing RNA-seq data | 8 |
| An educational resource providing an introduction to single-cell RNA-seq analysis with interactive tutorials and resources. | 3 |