CellExplorer
Cell analyzer
A tool for analyzing single-cell data from extracellular recordings
CellExplorer is a graphical user interface, a standardized processing module and data structure for exploring and classifying single cells acquired using extracellular electrodes.
96 stars
10 watching
59 forks
Language: MATLAB
last commit: about 23 hours ago
Linked from 1 awesome list
cell-metricsclassificationelectrophysiologyextracellular-recordingsframeworkguimatlabmatlab-guimatlab-toolboxneurosciencespikes
Related projects:
Repository | Description | Stars |
---|---|---|
cellprofiler/cellprofiler | A software application that automates the analysis of biological images for quantitative measurement of phenotypes | 925 |
cellprofiler/cellprofiler-analyst | A tool for exploring and analyzing large biological image sets to identify complex phenotypes | 147 |
omicsml/cellplm | An open-source pre-trained language model for analyzing cell types from single-cell data | 69 |
immcore/is-cellr | A web-based Shiny application for analyzing single-cell RNA sequencing data | 23 |
eiriniar/cellcnn | A Python-based software framework for analyzing mass/flow cytometry data to identify phenotype-associated cell subsets. | 65 |
schmollerlab/cell_acdc | A Python framework for analyzing and annotating microscopy data | 134 |
interactivereport/cellxgene_vip | A tool for generating high-resolution visualization plots and performing differential gene expression analysis from single cell RNA sequencing data | 135 |
cbg-ethz/scicone | A software tool for analyzing single-cell DNA sequencing data to reconstruct copy number events and cell histories in cancer research. | 20 |
cytomining/cytominer | Software for preprocessing and analyzing large cell profiling datasets | 49 |
kieranrcampbell/embeddr | Analyzes single-cell RNA-seq data using pseudotemporal ordering and clustering | 12 |
single-cell-genetics/cardelino | An R package for identifying clonal structures from single-cell RNA sequencing data using Bayesian methods. | 59 |
jepegit/cellpy | A Python package that assists in analyzing data from electrochemical tests of batteries and cells | 88 |
hemberg-lab/sc3 | A tool for clustering cells from single cell RNA-Seq experiments | 119 |
maximilianh/cellbrowser | An interactive viewer for single-cell datasets with meta-information and visualization capabilities | 105 |
euxhenh/cellar | An interactive software tool for analyzing single-cell omics data | 32 |