cellxgene_VIP
Cellular data visualizer
A tool for generating high-resolution visualization plots and performing differential gene expression analysis from single cell RNA sequencing data
Enables cellxgene to generate violin, stacked violin, stacked bar, heatmap, volcano, embedding, dot, track, density, 2D density, sankey and dual-gene plot in high-resolution SVG/PNG format. It also performs differential gene expression analysis and provides a Command Line Interface (CLI) for advanced users to perform analysis using python and R.
135 stars
6 watching
46 forks
Language: HTML
last commit: 7 months ago
Linked from 1 awesome list
cellxgenecellxgene-vippublication-quality-plotsscanpyscrna-seqseuratsvgvisualization
seandavi/awesome-single-cellRelated projects:
| Repository | Description | Stars |
|---|---|---|
 scverse/scanpy | A Python toolkit for analyzing large-scale single-cell gene expression data | 1,954 |
 yuifu/millefy | Visualizes read coverage of single-cell RNA-seq datasets in genomic contexts to highlight cell-to-cell heterogeneity | 28 |
 dmcable/spacexr | Software package for cell type identification and differential expression in spatial transcriptomics | 322 |
 cellgeni/scrna.seq.course | An educational resource teaching computational analysis of single-cell RNA-seq data using R and Bioconductor tools | 125 |
 kevinblighe/scdataviz | A package providing functions and tools for data visualization and clustering in single-cell analysis, designed to be flexible and compatible with various studies. | 63 |
 ficusss/pygmnormalize | A package for normalizing gene expression matrices using various techniques. | 9 |
 euxhenh/cellar | An interactive software tool for analyzing single-cell omics data | 32 |
 sentinal4d/cellshape | Analyzes 3D cell shape features using deep learning for cancer research | 21 |
 petersenpeter/cellexplorer | A tool for analyzing single-cell data from extracellular recordings | 96 |
 aertslab/scope | A tool for fast visualization of large-scale single-cell data | 68 |
 x-tabdeveloping/topicwizard | A tool for visualizing and interacting with topic models in text data | 106 |
| scverse/scvi-tools | Probabilistic analysis tools for single-cell omics data | 1,270 |
 mathewchamberlain/signacx | Classifies cellular phenotype in single-cell RNA sequencing data using neural networks | 24 |
 qile0317/apackoftheclones | Tools for visualizing and analyzing clonal expansion in immune cell populations | 14 |
 yoseflab/fastproject | Provides tools and methods for visualizing and analyzing single cell RNA-seq data in low dimensions | 35 |