PyGMNormalize

Gene expression normalizer

A package for normalizing gene expression matrices using various techniques.

bar_chart microscope Python package for normalization of gene expression matrices.

GitHub

9 stars
3 watching
3 forks
Language: Jupyter Notebook
last commit: almost 7 years ago
Linked from 1 awesome list


Backlinks from these awesome lists:

Related projects:

RepositoryDescriptionStars
abhishekvahadane/coderelease_colornormalizationSoftware package for stain separation and color normalization in histopathological images using computational pathology techniques66
scverse/scanpyA Python toolkit for analyzing large-scale single-cell gene expression data1,954
lanagarmire/ssrgeA Python package that performs sparse linear model fitting on gene expression data and SNV matrices.33
rhondabacher/scnormA software tool for normalizing single-cell RNA-seq data to enhance comparability and accuracy of downstream analyses47
johnnykv/mnemosyneNormalizes honeypot data from various feeds for analysis46
dib-lab/2012-paper-diginormProvides source code and analysis pipeline for evaluating an image normalization technique using publicly available data8
information-fusion-lab-umass/nuxA library for building parametric models of complex distributions using normalizing flows and JAX.82
nghiavtr/bpscA package for analyzing single-cell RNA-seq data using a beta-Poisson model.16
gwgundersen/dpccaDevelops a method to learn shared latent structure between biomedical images and gene expression data25
syntax-tree/nlcst-normalizeA utility to normalize words for comparison by standardizing punctuation and case.7
zqfang/gseapyA software package for performing gene set enrichment analysis in various types of biological data.580
teichlab/gpfatesSoftware to model transcriptional cell fates as mixtures of Gaussian Processes19
sigven/pcgrSoftware tool for annotating and interpreting cancer genome data to support precision oncology256
comphist/normaA tool for normalizing spelling in non-standard language data20
nsalomonis/altanalyzeAn automated cross-platform workflow for RNA-Seq gene and splicing analysis100