pcgr
Genome annotator
Software tool for annotating and interpreting cancer genome data to support precision oncology
Personal Cancer Genome Reporter (PCGR)
254 stars
24 watching
48 forks
Language: R
last commit: 28 days ago
Linked from 1 awesome list
annotation-frameworkannotation-toolcancercancer-genomicscancer-variantsclinicalcopy-number-variationinterpreteroncology-dataprecision-cancer-medicineprecision-oncologyreporting-enginesnvssomatictherapeutic-targetstumorvariant-interpretationvcf
seandavi/awesome-cancer-variant-databasesRelated projects:
| Repository | Description | Stars |
|---|---|---|
 jtaghiyar/kronos | Tools and workflow management for large-scale genome data analysis | 19 |
 odiogosilva/innuca-nf | A software framework for implementing high-quality assembly, quality control, and annotation of bacterial genomes | 3 |
 mhh-rcug/nf_wochenende | A tool for analyzing metagenomic data by aligning short or long reads against a reference sequence and generating reports on bacterial growth and abundance | 13 |
 pachterlab/gget | Enables efficient querying of genomic databases using a modular approach and multiple tools | 946 |
 wittelab/orchid | An annotation and machine learning framework for analyzing cancer mutations | 31 |
 gevaertlab/amaretto | An algorithm for identifying cancer driver genes by integrating multi-omics data and penalized regression | 16 |
 nbisweden/wgs-structvar | A Nextflow pipeline for running structural variation callers on whole genome sequencing data | 15 |
 crg-cnag/callings-nf | A Nextflow pipeline for RNA sequencing variant calling with GATK best practices | 132 |
 nghiavtr/bpsc | A package for analyzing single-cell RNA-seq data using a beta-Poisson model. | 16 |
 cbg-ethz/netics | Tools for integrating multi-omics data to prioritize cancer genes | 15 |
 brwnj/smoove-nf | An automation workflow for detecting structural variations in genomic data using the smoove toolset | 12 |
| pachterlab/cwgflhgcchap_2021 | Analyzing multiplexed single-cell RNA-seq data from a marine organism, providing tools for preprocessing, clustering, and analysis of gene expression across different cell types. | 2 |
 guigolab/ipsa-nf | An integrative pipeline for analyzing splicing events from RNA sequencing data | 9 |
 gwgundersen/dpcca | Develops a method to learn shared latent structure between biomedical images and gene expression data | 25 |
 jespermaag/gganatogram | An R package for visualizing anatograms of different organisms based on tissue coordinates from publicly available data sources. | 384 |