GSEApy
Gene analysis tool
A software package for performing gene set enrichment analysis in various types of biological data.
Gene Set Enrichment Analysis in Python
580 stars
11 watching
119 forks
Language: Python
last commit: over 1 year agoLinked from 1 awesome list
enrichment-analysisgseapython3rust
seandavi/awesome-single-cellRelated projects:
| Repository | Description | Stars |
|---|---|---|
 zji90/sepa | An R package providing tools for analyzing single-cell RNA-seq data and identifying gene expression patterns. | 4 |
 lanagarmire/ssrge | A Python package that performs sparse linear model fitting on gene expression data and SNV matrices. | 33 |
 scverse/scanpy | A Python toolkit for analyzing large-scale single-cell gene expression data | 1,954 |
 pachterlab/gget | Enables efficient querying of genomic databases using a modular approach and multiple tools | 955 |
 jamesjcai/scgeatoolbox | A toolset for analyzing single-cell gene expression data from RNA sequencing experiments. | 24 |
 qsong-github/sclm | A tool to automatically identify co-expressed genes across multiple single-cell RNA-seq datasets | 2 |
 fridleylab/spatialge | A software package for analyzing and visualizing spatial gene expression data from single-cell RNA sequencing assays. | 13 |
 nghiavtr/bpsc | A package for analyzing single-cell RNA-seq data using a beta-Poisson model. | 16 |
 cz-ye/decent | A software package that analyzes single-cell RNA-seq data to identify differential gene expression with capture efficiency adjustments | 14 |
 kiangkiangkiang/ggesda | An R package that enables exploratory data analysis of symbolic data using ggplot2. | 21 |
 dfajar2/bigscale | Analytical framework for single-cell data analysis | 1 |
 gramps-project/gramps | A genealogy program with features for hobbyists and professional genealogists | 2,224 |
 andersenlab/cegwas2-nf | A software framework for genomic association studies using C. elegans data | 8 |
| pachterlab/cwgflhgcchap_2021 | Analyzing multiplexed single-cell RNA-seq data from a marine organism, providing tools for preprocessing, clustering, and analysis of gene expression across different cell types. | 2 |
 wilkox/gggenes | Provides tools and functions for visualizing gene expression in genomic data using ggplot2 | 509 |