GSEApy

Gene analysis tool

A software package for performing gene set enrichment analysis in various types of biological data.

Gene Set Enrichment Analysis in Python

GitHub

566 stars
11 watching
118 forks
Language: Python
last commit: 8 days ago
Linked from 1 awesome list

enrichment-analysisgseapython3rust

Backlinks from these awesome lists:

Related projects:

Repository Description Stars
zji90/sepa A tool for analyzing single-cell RNA-seq data to identify gene expression patterns and perform GO enrichment analysis. 4
lanagarmire/ssrge A Python package that performs sparse linear model fitting on gene expression data and SNV matrices. 33
scverse/scanpy A Python toolkit for analyzing large-scale single-cell gene expression data 1,919
pachterlab/gget Enables efficient querying of genomic databases using a modular approach and multiple tools 946
jamesjcai/scgeatoolbox A toolset for analyzing single-cell gene expression data from RNA sequencing experiments. 24
qsong-github/sclm A tool to automatically identify co-expressed genes across multiple single-cell RNA-seq datasets 2
fridleylab/spatialge A software package for analyzing and visualizing spatial gene expression data from single-cell RNA sequencing assays. 13
nghiavtr/bpsc A package for analyzing single-cell RNA-seq data using a beta-Poisson model. 16
cz-ye/decent A software package that analyzes single-cell RNA-seq data to identify differential gene expression with capture efficiency adjustments 14
kiangkiangkiang/ggesda An R package that enables exploratory data analysis of symbolic data using ggplot2. 21
dfajar2/bigscale An analytical framework for analyzing large-scale single-cell data by identifying coexpressed genes and detecting differentially expressed genes across multiple clusters. 1
gramps-project/gramps A genealogy program with features for hobbyists and professional genealogists 2,193
andersenlab/cegwas2-nf A software framework for genomic association studies using C. elegans data 8
pachterlab/cwgflhgcchap_2021 Analyzing multiplexed single-cell RNA-seq data from a marine organism, providing tools for preprocessing, clustering, and analysis of gene expression across different cell types. 2
wilkox/gggenes Provides tools and functions for visualizing gene expression in genomic data using ggplot2 499