nf-hack17-tutorial

nextflow-io/nf-hack1710

Bioinformatics pipeline project

An initiative to develop and showcase Nextflow-based pipelines for bioinformatics analysis

nextflow-io/crg-course-nov1623

RNA sequencing pipeline

A tutorial project on using Nextflow and Docker for implementing a RNA-Seq pipeline

nextflow-io/rnaseq-nf74

Pipeline

A pipeline for quantifying genomic features from short read data using Nextflow and various software components.

biocorecrg/bionextflow26

Pipeline framework

A collection of reusable modules and sub-workflows for Nextflow pipelines in bioinformatics

nextflow-io/elixir-workshop-215

Nextflow workshop

A tutorial project demonstrating Nextflow workflow management for Elixir workflows

nextflow-io/nf-sqldb26

SQL DB plugin

Provides support for interacting with SQL databases in workflow scripts

ncbi-hackathons/spew26

Pipeline wrapper

Automates the packaging and distribution of bioinformatics pipelines for seamless deployment on various workstations.

nf-core/tools245

Bioinformatics toolkit

Provides a set of reusable Python functions and tools for bioinformatics and workflow management.

nextflow-io/patterns336

Nextflow patterns

A curated collection of reusable patterns and techniques for implementing Nextflow workflows

shaze/nextflow-course6

Course

Teaches Nextflow DSL2 using a tutorial-style course with exercises

nf-core/rnafusion147

Gene fusion analyzer

A bioinformatics pipeline for detecting and analyzing gene fusions from RNA sequencing data

zuberlab/crispr-process-nf3

Data processor

Tools for processing CRISPR and shRNA data in a high-throughput screening workflow

ncbi-hackathons/atacflow14

ATAC-seq pipeline

A Nextflow-based pipeline for performing ATAC-seq analysis

guigolab/grape-nf37

RNA-seq pipeline

Automated RNA-seq analysis pipeline using Nextflow and Docker/Singularity containers

bionode/biohacker5

Bioinformatics workflow example

A workshop project providing examples and usage guidance for using bionode in bioinformatics pipelines