immunarch
Repertoire analyzer
A software package for analyzing T-cell and B-cell receptor repertoires in immune sequencing data
🧬 Immunarch: an R Package for Fast and Painless Exploration of Single-cell and Bulk T-cell/Antibody Immune Repertoires
313 stars
14 watching
65 forks
Language: R
last commit: 11 months ago
Linked from 1 awesome list
airr-analysisb-cell-receptorbcrbcr-repertoirebioinformaticsigig-repertoireimmune-repertoireimmune-repertoire-analysisimmune-repertoire-dataimmunoglobulinimmunoinformaticsimmunologyrep-seqrepertoire-analysissingle-cellsingle-cell-analysist-cell-receptortcrtcr-repertoire
Related projects:
Repository | Description | Stars |
---|---|---|
| A toolkit for analyzing single-cell immune data from various formats using machine learning and bioinformatics techniques. | 312 |
| Analyzes single-cell TCR and BCR data from scRNA-seq using Python | 222 |
| A web-based Shiny application for analyzing single-cell RNA sequencing data | 23 |
| Tool for integrated analysis of single-cell RNAseq data and immune receptor profiling data | 20 |
| Tools and methods for analyzing single-cell RNA sequencing data, including expression normalization and differential gene expression analysis. | 22 |
| Analyzes single-cell RNA-seq data using pseudotemporal ordering and clustering | 12 |
| Tools for visualizing and analyzing clonal expansion in immune cell populations | 14 |
| A collection of tools and scripts for analyzing and visualizing single-cell tumor immune data from multiple cancer types and patients | 62 |
| Provides tools and methods for analyzing single-cell RNA sequencing data using statistical models | 228 |
| Analyzes correlated hidden factors from single-cell transcriptomes to identify biological variation | 8 |
| An R-based web application for guided single-cell RNA-seq data analysis and clustering | 33 |
| An R package for extracting and reporting biological signals from weather radar data. | 29 |
| A package providing tools for comparing and analyzing clusterings of single-cell sequencing data | 37 |
| Software for preprocessing and analyzing large cell profiling datasets | 49 |
| Algorithmic software for analyzing single-cell RNA sequencing data to reconstruct T cell receptor sequences. | 14 |