APackOfTheClones
Visualizer
Software package to visualize clonal expansion in single-cell immune repertoire data
Visualize clonal expansion via circle-packing. 'APackOfTheClones' extends 'scRepertoire' to produce a publication-ready visualization of clonal expansion at a single cell resolution, by representing expanded clones as differently sized circles.
14 stars
1 watching
1 forks
Language: R
last commit: 8 days ago clonal-analysisimmune-repertoireimmune-systemrscrna-seqscrnaseqseuratsingle-cellsingle-cell-genomics
Related projects:
Repository | Description | Stars |
---|---|---|
single-cell-genetics/cardelino | An R package for identifying clonal structures from single-cell RNA sequencing data using Bayesian methods. | 59 |
antoniodefalco/scevan | Automated tool for classifying cells in scRNA data and inferring copy number profiles of malignant cells. | 93 |
kieranrcampbell/clonealign | A software package that uses Bayesian inference to assign gene expression estimates from single-cell RNA-seq and DNA-seq data to specific cancer clones. | 32 |
zjufanlab/sccatch | Automated tool for annotating cell types from single-cell RNA sequencing data based on marker genes | 218 |
asmagen/robustsinglecell | An R-based software package for analyzing scRNA-seq data to identify robust cell subpopulations and compare population compositions across different tissues and experimental models. | 13 |
scverse/scirpy | Analyzes single-cell TCR and BCR data from scRNA-seq using Python | 220 |
catavallejos/basics | An integrated Bayesian hierarchical model to analyze single-cell sequencing data | 84 |
kchen-lab/medalt | Software for inferring evolutionary lineage of tumor cells from single cell copy number profiles | 17 |
kharchenkolab/numbat | Analyzes single-cell RNA-seq data to detect allele-specific copy number variations and infer lineage relationships in cancer cells | 166 |
xmc811/scillus | A package for processing and visualizing single-cell RNA-seq data in R, providing an efficient and customizable framework for analyzing complex biological datasets. | 53 |
irrationone/cellassign | Automated assignment of cell types in single-cell RNA-seq data based on marker genes and patient/batch effects | 195 |
agitter/single-cell-pseudotime | Catalogs algorithms for estimating the position of cells in a developmental trajectory from single-cell gene expression data | 408 |
ncborcherding/screpertoire | A toolkit for analyzing single-cell immune data from various formats using machine learning and bioinformatics techniques. | 310 |
cbg-ethz/scicone | A software tool for analyzing single-cell DNA sequencing data to reconstruct copy number events and cell histories in cancer research. | 20 |
imb-computational-genomics-lab/ascend | Tools and methods for analyzing single-cell RNA sequencing data, including expression normalization and differential gene expression analysis. | 22 |