scImpute
Imputation library
Provides methods to accurately and robustly impute missing values in scRNA-seq data for downstream analysis tasks such as dimension reduction, clustering, and differential gene expression.
Accurate and robust imputation of scRNA-seq data
92 stars
8 watching
34 forks
Language: R
last commit: over 5 years ago
Linked from 1 awesome list
imputationr-packagesingle-cell-rna-seq
Related projects:
Repository | Description | Stars |
---|---|---|
scverse/scvi-tools | Probabilistic analysis tools for single-cell omics data | 1,251 |
kirstlab/asc_seurat | An R-based web application for scRNA-seq analysis that provides a user-friendly interface for data preprocessing, visualization, and annotation. | 23 |
scverse/scirpy | Analyzes single-cell TCR and BCR data from scRNA-seq using Python | 220 |
chenmengjie/viper | A software package implementing a method to impute missing values in gene expression data using a penalized regression model | 18 |
constantamateur/soupx | A tool to quantify and remove cell-specific mRNA contamination from single-cell RNA-seq data. | 259 |
vibscc/dali | Tool for integrated analysis of single-cell RNAseq data and immune receptor profiling data | 20 |
dtm2451/dittoseq | A suite of functions for analyzing and visualizing RNA sequencing data | 190 |
helenalc/muscat | Analyzes multi-sample scRNA-seq data to identify differential states between cell subpopulations and experimental conditions. | 163 |
edepasquale/doubletdecon | Deconvolutes single-cell RNA-seq data from potential doublets to remove contamination | 69 |
xinychen/transdim | Develops machine learning models to handle incomplete transportation data and make accurate predictions | 1,216 |
catavallejos/basics | An integrated Bayesian hierarchical model to analyze single-cell sequencing data | 84 |
tallulandrews/m3drop | Software to model and analyze dropout patterns in single-cell RNA sequencing data | 29 |
kharchenkolab/numbat | Analyzes single-cell RNA-seq data to detect allele-specific copy number variations and infer lineage relationships in cancer cells | 166 |
nbisweden/excelerate-scrnaseq | An open-source R package providing tools and methods for analyzing single cell RNA-seq data | 216 |
insilicodb/snp-imputation-nf | A portable and scalable pipeline for imputing missing single nucleotide polymorphism (SNP) data in genetic studies. | 1 |