SoupX

reactorsh/ambrosia114

Dataset cleaner

A command-line tool for improving text datasets used in machine learning by removing duplicates and filtering out unwanted data

edepasquale/doubletdecon69

Data decontamination tool

Deconvolutes single-cell RNA-seq data from potential doublets to remove contamination

mohuangx/saver109

Gene expression recovery tool

Recover gene expression profiles from noisy single-cell RNA-seq data using regression and empirical Bayes methods.

scverse/scvi-tools1.3K

Cell data analyzer

Probabilistic analysis tools for single-cell omics data

f34nk/tidy_ex9

HTML cleaner

A C-based Elixir binding for a popular HTML cleaning tool.

ropensci/coordinatecleaner79

Data cleaner

Automated tool to detect and flag spatial and temporal errors in biological data

yoseflab/scone53

Data processor

Tools for quality control and normalization of single-cell RNA-seq data

msamogh/nonechucks378

Data cleaner

Library that provides dynamic data cleaning and filtering capabilities for PyTorch datasets and samplers

snakemake-workflows/single-cell-rna-seq100

RNA-seq analyzer

A workflow generator for single-cell RNA-seq data analysis

robhabraken/shrink2

Media database analyzer and cleaner

Analyzes and cleans up media libraries in Sitecore databases to optimize storage usage.

kharchenkolab/dropest88

Single-cell RNA-seq analysis pipeline

A software pipeline for analyzing single-cell RNA-seq data from droplet-based experiments

patois/xray125

Filterer

Tool for filtering and highlighting decompiler output based on regular expressions

dtm2451/dittoseq191

RNA analysis toolkit

A suite of functions for analyzing and visualizing RNA sequencing data

kharchenkolab/numbat171

Cell analysis tool

Analyzes single-cell RNA-seq data to detect allele-specific copy number variations and infer lineage relationships in cancer cells

rabadanlab/sctda7

Single-cell RNA-seq analyzer

An object-oriented Python library for analyzing single-cell RNA-seq data using topological representations