DoubletDecon
Data decontamination tool
Deconvolutes single-cell RNA-seq data from potential doublets to remove contamination
A tool for removing doublets from single-cell RNA-seq data
69 stars
6 watching
19 forks
Language: R
last commit: about 4 years ago
Linked from 1 awesome list
Related projects:
Repository | Description | Stars |
---|---|---|
dtm2451/dittoseq | A suite of functions for analyzing and visualizing RNA sequencing data | 191 |
constantamateur/soupx | A tool to quantify and remove cell-specific mRNA contamination from single-cell RNA-seq data. | 260 |
jonathanshor/doubletdetection | A tool for detecting technical errors in single-cell RNA-seq data | 87 |
drisso/bioc2016singlecell | Analyzing single-cell RNA-seq data using R and Bioconductor tools | 76 |
statgen/demuxlet | A software tool that identifies sample identity and detects multiplets in pooled single cell RNA-seq samples. | 122 |
niaid/dsb | Deconvolution method to remove noise from antibody-derived tag data | 64 |
swolock/scrublet | A tool to identify technical doublets in single-cell RNA-seq data by removing co-encapsulated cells from the analysis | 138 |
chris-mcginnis-ucsf/doubletfinder | Detects doublets in single-cell RNA sequencing data by analyzing cell distances and proportions of artificial neighbors | 424 |
fox-it/dissect.esedb | A Dissect module implementing a parser for a specific Microsoft database format used in various enterprise systems. | 18 |
vivianstats/scimpute | Software for accurate imputation of scRNA-seq data with robust methods and fast calculation. | 92 |
fox-it/dissect | A digital forensics framework that provides tools and parsers to analyze forensic artefacts from various disk and file formats. | 939 |
scverse/scvi-tools | Probabilistic analysis tools for single-cell omics data | 1,270 |
iosonofabio/singlet | Analyzes single cell RNA sequence data with quantitative phenotypes | 13 |
vibscc/dali | Tool for integrated analysis of single-cell RNAseq data and immune receptor profiling data | 20 |
yjzhang/uncurl_python | Analyzes single-cell RNA-seq data using statistical models and machine learning algorithms | 15 |