demuxlet

Sample identifier

A software tool that identifies sample identity and detects multiplets in pooled single cell RNA-seq samples.

Genetic multiplexing of barcoded single cell RNA-seq

GitHub

122 stars
10 watching
26 forks
Language: C++
last commit: about 2 years ago
Linked from 1 awesome list


Backlinks from these awesome lists:

Related projects:

RepositoryDescriptionStars
kdkorthauer/scddAn R package to identify genes with differential distributions in single-cell RNA-seq experiments32
pachterlab/sircelA tool for identifying and quantifying cell barcodes from single-cell genomics sequencing data.41
su-informatics-lab/dstgSoftware implementation of graph-based AI method for decomposing spatial transcriptomics data35
swolock/scrubletA tool to identify technical doublets in single-cell RNA-seq data by removing co-encapsulated cells from the analysis138
edepasquale/doubletdeconDeconvolutes single-cell RNA-seq data from potential doublets to remove contamination69
dtm2451/dittoseqA suite of functions for analyzing and visualizing RNA sequencing data191
scverse/scvi-toolsProbabilistic analysis tools for single-cell omics data1,270
mathewchamberlain/signacxClassifies cellular phenotype in single-cell RNA sequencing data using neural networks24
rglab/mastProvides tools and methods for analyzing single-cell RNA sequencing data using statistical models228
zjufanlab/scdeepsortA tool for accurately annotating cell types in single-cell RNA sequencing data using deep learning100
chrisquince/desmanSoftware for analyzing genetic data from environmental samples to infer the presence of specific strains69
lengning/oefinderAn R-based tool for identifying ordering effect genes in single cell RNA-seq data3
hmatsu1226/scoupA probabilistic model to analyze single-cell expression data during differentiation9
jhu99/scbeanAnalyzes single-cell multi-omics data from various modalities like RNA-seq and ATAC-seq16
jamesjcai/scgeatoolboxA toolset for analyzing single-cell gene expression data from RNA sequencing experiments.24