scDD

Gene identifier

An R package to identify genes with differential distributions in single-cell RNA-seq experiments

R package to identify genes with differential distributions in single-cell RNA-seq

GitHub

32 stars
5 watching
15 forks
Language: R
last commit: almost 3 years ago
Linked from 1 awesome list


Backlinks from these awesome lists:

Related projects:

Repository Description Stars
lengning/oefinder An R-based tool for identifying ordering effect genes in single cell RNA-seq data 3
kstreet13/bioc2020trajectories Analyzing and comparing single-cell RNA-seq data across multiple conditions to infer cell trajectories and detect differential expression. 25
jdekanter/chetah A method for cell type identification in single-cell RNA sequencing data using hierarchical clustering 42
statgen/demuxlet A software tool that identifies sample identity and detects multiplets in pooled single cell RNA-seq samples. 122
antoniodefalco/scevan Automated tool for classifying cells in scRNA data and inferring copy number profiles of malignant cells. 94
kchen-lab/scmarker A tool to identify cell-specific markers from single-cell RNA sequencing data by filtering out genes with unimodal distributions and selecting synergistically expressed gene pairs. 15
kharchenkolab/numbat Analyzes single-cell RNA-seq data to detect allele-specific copy number variations and infer lineage relationships in cancer cells 171
dmcable/spacexr Software package for cell type identification and differential expression in spatial transcriptomics 322
single-cell-genetics/cardelino An R package for identifying clonal structures from single-cell RNA sequencing data using Bayesian methods. 59
qsong-github/sclm A tool to automatically identify co-expressed genes across multiple single-cell RNA-seq datasets 2
imb-computational-genomics-lab/ascend Tools and methods for analyzing single-cell RNA sequencing data, including expression normalization and differential gene expression analysis. 22
zjufanlab/sccatch Automated tool for annotating cell types from single-cell RNA sequencing data based on marker genes 219
dtm2451/dittoseq A suite of functions for analyzing and visualizing RNA sequencing data 191
edsgard/trendsceek Identifies genes with spatial expression trends in single-cell gene-expression data 50
kchen-lab/medalt Software for inferring evolutionary lineage of tumor cells from single cell copy number profiles 17