scDD
Gene identifier
An R package to identify genes with differential distributions in single-cell RNA-seq experiments
R package to identify genes with differential distributions in single-cell RNA-seq
32 stars
5 watching
15 forks
Language: R
last commit: over 2 years ago
Linked from 1 awesome list
seandavi/awesome-single-cellRelated projects:
| Repository | Description | Stars |
|---|---|---|
 lengning/oefinder | An R-based tool for identifying ordering effect genes in single cell RNA-seq data | 3 |
 kstreet13/bioc2020trajectories | An R package for comparing multiple conditions in single-cell RNA-seq trajectory inference | 25 |
 jdekanter/chetah | A method for cell type identification in single-cell RNA sequencing data using hierarchical clustering | 41 |
 statgen/demuxlet | A software tool that identifies sample identity and detects multiplets in pooled single cell RNA-seq samples. | 121 |
 antoniodefalco/scevan | Automated tool for classifying cells in scRNA data and inferring copy number profiles of malignant cells. | 93 |
 kchen-lab/scmarker | An R package for identifying marker genes from single cell RNA sequencing data by applying statistical filters to select cell-type-specific gene markers | 15 |
 kharchenkolab/numbat | Analyzes single-cell RNA-seq data to detect allele-specific copy number variations and infer lineage relationships in cancer cells | 166 |
 dmcable/spacexr | Software package for cell type identification and differential expression in spatial transcriptomics | 312 |
 single-cell-genetics/cardelino | An R package for identifying clonal structures from single-cell RNA sequencing data using Bayesian methods. | 59 |
 qsong-github/sclm | A tool to automatically identify co-expressed genes across multiple single-cell RNA-seq datasets | 2 |
 imb-computational-genomics-lab/ascend | Tools and methods for analyzing single-cell RNA sequencing data, including expression normalization and differential gene expression analysis. | 22 |
 zjufanlab/sccatch | Automated tool for annotating cell types from single-cell RNA sequencing data based on marker genes | 218 |
 dtm2451/dittoseq | A suite of functions for analyzing and visualizing RNA sequencing data | 190 |
 edsgard/trendsceek | Identifies genes with spatial expression trends in single-cell gene-expression data | 49 |
| kchen-lab/medalt | Software for inferring evolutionary lineage of tumor cells from single cell copy number profiles | 17 |