trendsceek
Gene trend analyzer
Identifies genes with spatial expression trends in single-cell gene-expression data
Identify genes with spatial expression trends in single-cell gene expression data
50 stars
7 watching
17 forks
Language: HTML
last commit: over 7 years ago
Linked from 1 awesome list
seandavi/awesome-single-cellRelated projects:
| Repository | Description | Stars |
|---|---|---|
 teichlab/spatialde | Tools and methods to analyze gene expression data in relation to spatial coordinates | 151 |
 jamesjcai/scgeatoolbox | A toolset for analyzing single-cell gene expression data from RNA sequencing experiments. | 24 |
 zji90/sepa | An R package providing tools for analyzing single-cell RNA-seq data and identifying gene expression patterns. | 4 |
 fridleylab/spatialge | A software package for analyzing and visualizing spatial gene expression data from single-cell RNA sequencing assays. | 13 |
 kdkorthauer/scdd | An R package to identify genes with differential distributions in single-cell RNA-seq experiments | 32 |
 qifeidkn/stagate | A software framework for learning spatial embeddings from high-dimensional transcriptomics data using an adaptive graph attention auto-encoder | 41 |
 dmcable/spacexr | Software package for cell type identification and differential expression in spatial transcriptomics | 322 |
 kstreet13/bioc2020trajectories | Analyzing and comparing single-cell RNA-seq data across multiple conditions to infer cell trajectories and detect differential expression. | 25 |
 cz-ye/decent | A software package that analyzes single-cell RNA-seq data to identify differential gene expression with capture efficiency adjustments | 14 |
 nghiavtr/bpsc | A package for analyzing single-cell RNA-seq data using a beta-Poisson model. | 16 |
 dfajar2/bigscale | Analytical framework for single-cell data analysis | 1 |
 edward130603/bayesspace | A Bayesian model for clustering and enhancing spatial gene expression data | 114 |
 nvidia-genomics-research/rapids-single-cell-examples | A collection of example notebooks demonstrating GPU-accelerated single-cell genomic analysis using the RAPIDS libraries | 327 |
 zqfang/gseapy | A software package for performing gene set enrichment analysis in various types of biological data. | 580 |
 hallvaaw/scifer | Analyze single cell mRNA expression at specific genomic loci using read alignment and filtering techniques | 0 |