trendsceek
Gene trend analyzer
Identifies genes with spatial expression trends in single-cell gene-expression data
Identify genes with spatial expression trends in single-cell gene expression data
49 stars
7 watching
17 forks
Language: HTML
last commit: over 6 years ago
Linked from 1 awesome list
Related projects:
Repository | Description | Stars |
---|---|---|
teichlab/spatialde | Tools and methods to analyze gene expression data in relation to spatial coordinates | 145 |
jamesjcai/scgeatoolbox | A toolset for analyzing single-cell gene expression data from RNA sequencing experiments. | 24 |
zji90/sepa | A tool for analyzing single-cell RNA-seq data to identify gene expression patterns and perform GO enrichment analysis. | 4 |
fridleylab/spatialge | A software package for analyzing and visualizing spatial gene expression data from single-cell RNA sequencing assays. | 13 |
kdkorthauer/scdd | An R package to identify genes with differential distributions in single-cell RNA-seq experiments | 32 |
qifeidkn/stagate | A software framework for learning spatial embeddings from high-dimensional transcriptomics data using an adaptive graph attention auto-encoder | 37 |
dmcable/spacexr | Software package for cell type identification and differential expression in spatial transcriptomics | 312 |
kstreet13/bioc2020trajectories | An R package for comparing multiple conditions in single-cell RNA-seq trajectory inference | 25 |
cz-ye/decent | A software package that analyzes single-cell RNA-seq data to identify differential gene expression with capture efficiency adjustments | 14 |
nghiavtr/bpsc | A package for analyzing single-cell RNA-seq data using a beta-Poisson model. | 16 |
dfajar2/bigscale | An analytical framework for analyzing large-scale single-cell data by identifying coexpressed genes and detecting differentially expressed genes across multiple clusters. | 1 |
edward130603/bayesspace | A Bayesian model for clustering and enhancing spatial gene expression data | 111 |
nvidia-genomics-research/rapids-single-cell-examples | A collection of example notebooks demonstrating GPU-accelerated single-cell genomic analysis using the RAPIDS libraries | 324 |
zqfang/gseapy | A software package for performing gene set enrichment analysis in various types of biological data. | 566 |
hallvaaw/scifer | Analyze single cell mRNA expression at specific genomic loci using read alignment and filtering techniques | 0 |