trendsceek

Gene trend analyzer

Identifies genes with spatial expression trends in single-cell gene-expression data

Identify genes with spatial expression trends in single-cell gene expression data

GitHub

49 stars
7 watching
17 forks
Language: HTML
last commit: over 6 years ago
Linked from 1 awesome list


Backlinks from these awesome lists:

Related projects:

Repository Description Stars
teichlab/spatialde Tools and methods to analyze gene expression data in relation to spatial coordinates 145
jamesjcai/scgeatoolbox A toolset for analyzing single-cell gene expression data from RNA sequencing experiments. 24
zji90/sepa A tool for analyzing single-cell RNA-seq data to identify gene expression patterns and perform GO enrichment analysis. 4
fridleylab/spatialge A software package for analyzing and visualizing spatial gene expression data from single-cell RNA sequencing assays. 13
kdkorthauer/scdd An R package to identify genes with differential distributions in single-cell RNA-seq experiments 32
qifeidkn/stagate A software framework for learning spatial embeddings from high-dimensional transcriptomics data using an adaptive graph attention auto-encoder 37
dmcable/spacexr Software package for cell type identification and differential expression in spatial transcriptomics 312
kstreet13/bioc2020trajectories An R package for comparing multiple conditions in single-cell RNA-seq trajectory inference 25
cz-ye/decent A software package that analyzes single-cell RNA-seq data to identify differential gene expression with capture efficiency adjustments 14
nghiavtr/bpsc A package for analyzing single-cell RNA-seq data using a beta-Poisson model. 16
dfajar2/bigscale An analytical framework for analyzing large-scale single-cell data by identifying coexpressed genes and detecting differentially expressed genes across multiple clusters. 1
edward130603/bayesspace A Bayesian model for clustering and enhancing spatial gene expression data 111
nvidia-genomics-research/rapids-single-cell-examples A collection of example notebooks demonstrating GPU-accelerated single-cell genomic analysis using the RAPIDS libraries 324
zqfang/gseapy A software package for performing gene set enrichment analysis in various types of biological data. 566
hallvaaw/scifer Analyze single cell mRNA expression at specific genomic loci using read alignment and filtering techniques 0