SCOUP

Differentiation analyzer

A probabilistic model to analyze single-cell expression data during differentiation

SCOUP is a probabilistic model to analyze single-cell expression data during differentiation

GitHub

9 stars
1 watching
3 forks
Language: C++
last commit: over 7 years ago
Linked from 1 awesome list


Backlinks from these awesome lists:

Related projects:

Repository Description Stars
jhu99/scbean Analyzes single-cell multi-omics data from various modalities like RNA-seq and ATAC-seq 16
dawe/schist An interface to perform nested stochastic block model analysis on single-cell data using graph-tool methods. 32
scverse/scvi-tools Probabilistic analysis tools for single-cell omics data 1,251
zji90/scrat A software tool for analyzing single-cell regulome data from ATAC-seq experiments. 13
hms-dbmi/scde Provides statistical methods for analyzing single-cell RNA-seq data, focusing on error modeling and differential expression analysis. 173
phoenixding/scdiff Analyzes single-cell RNA-seq data to predict cell differentiation trajectories and associated transcription factors and genes. 28
catavallejos/basics An integrated Bayesian hierarchical model to analyze single-cell sequencing data 84
kharchenkolab/numbat Analyzes single-cell RNA-seq data to detect allele-specific copy number variations and infer lineage relationships in cancer cells 166
jamesjcai/scgeatoolbox A toolset for analyzing single-cell gene expression data from RNA sequencing experiments. 24
rabadanlab/sctda An object-oriented Python library for analyzing single-cell RNA-seq data using topological representations 7
iosonofabio/singlet Analyzes single cell RNA sequence data with quantitative phenotypes 13
hmatsu1226/scode An algorithm to infer regulatory networks from single-cell RNA sequencing data during differentiation 42
zjufanlab/sccatch Automated tool for annotating cell types from single-cell RNA sequencing data based on marker genes 218
emergent-behaviors-in-biology/sctop A tool for identifying cell phenotypes from single-cell RNA sequencing data by projecting onto known cell types 3
statgen/demuxlet A software tool that identifies sample identity and detects multiplets in pooled single cell RNA-seq samples. 121