SCOUP
Differentiation analyzer
A probabilistic model to analyze single-cell expression data during differentiation
SCOUP is a probabilistic model to analyze single-cell expression data during differentiation
9 stars
1 watching
3 forks
Language: C++
last commit: over 7 years ago
Linked from 1 awesome list
Related projects:
Repository | Description | Stars |
---|---|---|
jhu99/scbean | Analyzes single-cell multi-omics data from various modalities like RNA-seq and ATAC-seq | 16 |
dawe/schist | An interface to perform nested stochastic block model analysis on single-cell data using graph-tool methods. | 32 |
scverse/scvi-tools | Probabilistic analysis tools for single-cell omics data | 1,251 |
zji90/scrat | A software tool for analyzing single-cell regulome data from ATAC-seq experiments. | 13 |
hms-dbmi/scde | Provides statistical methods for analyzing single-cell RNA-seq data, focusing on error modeling and differential expression analysis. | 173 |
phoenixding/scdiff | Analyzes single-cell RNA-seq data to predict cell differentiation trajectories and associated transcription factors and genes. | 28 |
catavallejos/basics | An integrated Bayesian hierarchical model to analyze single-cell sequencing data | 84 |
kharchenkolab/numbat | Analyzes single-cell RNA-seq data to detect allele-specific copy number variations and infer lineage relationships in cancer cells | 166 |
jamesjcai/scgeatoolbox | A toolset for analyzing single-cell gene expression data from RNA sequencing experiments. | 24 |
rabadanlab/sctda | An object-oriented Python library for analyzing single-cell RNA-seq data using topological representations | 7 |
iosonofabio/singlet | Analyzes single cell RNA sequence data with quantitative phenotypes | 13 |
hmatsu1226/scode | An algorithm to infer regulatory networks from single-cell RNA sequencing data during differentiation | 42 |
zjufanlab/sccatch | Automated tool for annotating cell types from single-cell RNA sequencing data based on marker genes | 218 |
emergent-behaviors-in-biology/sctop | A tool for identifying cell phenotypes from single-cell RNA sequencing data by projecting onto known cell types | 3 |
statgen/demuxlet | A software tool that identifies sample identity and detects multiplets in pooled single cell RNA-seq samples. | 121 |