scTOP
Cell phenotype projector
A tool for identifying cell phenotypes from single-cell RNA sequencing data by projecting onto known cell types
A package for identifying cell phenotype from single-cell RNA-sequencing data.
3 stars
1 watching
2 forks
Language: Jupyter Notebook
last commit: about 1 year ago
Linked from 1 awesome list
seandavi/awesome-single-cellRelated projects:
| Repository | Description | Stars |
|---|---|---|
 zjufanlab/scdeepsort | A tool for accurately annotating cell types in single-cell RNA sequencing data using deep learning | 100 |
 mathewchamberlain/signacx | Classifies cellular phenotype in single-cell RNA sequencing data using neural networks | 24 |
 antoniodefalco/scevan | Automated tool for classifying cells in scRNA data and inferring copy number profiles of malignant cells. | 94 |
 scverse/scvi-tools | Probabilistic analysis tools for single-cell omics data | 1,270 |
| zjufanlab/sccatch | Automated tool for annotating cell types from single-cell RNA sequencing data based on marker genes | 219 |
 qile0317/apackoftheclones | Tools for visualizing and analyzing clonal expansion in immune cell populations | 14 |
 hmatsu1226/scoup | A probabilistic model to analyze single-cell expression data during differentiation | 9 |
 eiriniar/cellcnn | A Python-based software framework for analyzing mass/flow cytometry data to identify phenotype-associated cell subsets. | 65 |
 single-cell-genetics/cardelino | An R package for identifying clonal structures from single-cell RNA sequencing data using Bayesian methods. | 59 |
 irrationone/cellassign | Automated assignment of cell types in single-cell RNA-seq data based on marker genes and patient/batch effects | 197 |
| zjufanlab/spatalk | An R package that infers cell-cell communication and ligand-receptor-target networks from spatially resolved transcriptomic data | 61 |
 kstreet13/bioc2020trajectories | Analyzing and comparing single-cell RNA-seq data across multiple conditions to infer cell trajectories and detect differential expression. | 25 |
 dmcable/spacexr | Software package for cell type identification and differential expression in spatial transcriptomics | 322 |
 sentinal4d/cellshape | Analyzes 3D cell shape features using deep learning for cancer research | 21 |
 iosonofabio/singlet | Analyzes single cell RNA sequence data with quantitative phenotypes | 13 |