SCODE

Regulatory network inference algorithm

An algorithm to infer regulatory networks from single-cell RNA sequencing data during differentiation

SCODE : an efficient regulatory network inference algorithm from single-cell RNA-Seq during differentiation

GitHub

42 stars
2 watching
16 forks
Language: R
last commit: almost 5 years ago
Linked from 1 awesome list


Backlinks from these awesome lists:

Related projects:

Repository Description Stars
cabsel/sincerities Infers gene regulatory networks from time-stamped single cell transcriptional expression profiles using a statistical method 11
hmatsu1226/scoup A probabilistic model to analyze single-cell expression data during differentiation 9
pinellolab/dictys Reconstructs dynamic gene regulatory networks from single-cell RNA and ATAC-seq data to understand cell-type specific transcription factor regulation. 111
kstreet13/bioc2020trajectories An R package for comparing multiple conditions in single-cell RNA-seq trajectory inference 25
hms-dbmi/scde Provides statistical methods for analyzing single-cell RNA-seq data, focusing on error modeling and differential expression analysis. 173
lingfeiwang/normalisr A software framework for analyzing single-cell RNA sequencing data 18
rabadanlab/sctda An object-oriented Python library for analyzing single-cell RNA-seq data using topological representations 7
bimsbbioinfo/netsmooth Improves single cell RNA-seq data by smoothing out noise using prior information from gene interaction networks 27
kdkorthauer/scdd An R package to identify genes with differential distributions in single-cell RNA-seq experiments 32
zjufanlab/spatalk An R package that infers cell-cell communication and ligand-receptor-target networks from spatially resolved transcriptomic data 62
antoniodefalco/scevan Automated tool for classifying cells in scRNA data and inferring copy number profiles of malignant cells. 93
yoseflab/scone Tools for quality control and normalization of single-cell RNA-seq data 53
catavallejos/basics An integrated Bayesian hierarchical model to analyze single-cell sequencing data 84
qile0317/apackoftheclones Software package to visualize clonal expansion in single-cell immune repertoire data 14
aertslab/scenic A tool for inferring Gene Regulatory Networks and cell types from single-cell RNA-seq data 420