scvi-tools
Cell data analyzer
Probabilistic analysis tools for single-cell omics data
Deep probabilistic analysis of single-cell and spatial omics data
1k stars
26 watching
353 forks
Language: Python
last commit: 5 days ago
Linked from 1 awesome list
cite-seqdeep-generative-modeldeep-learninghuman-cell-atlasscrna-seqscversesingle-cell-genomicssingle-cell-rna-seqvariational-autoencodervariational-bayes
Related projects:
Repository | Description | Stars |
---|---|---|
catavallejos/basics | An integrated Bayesian hierarchical model to analyze single-cell sequencing data | 84 |
scverse/scanpy | A Python toolkit for analyzing large-scale single-cell gene expression data | 1,919 |
jhu99/scbean | Analyzes single-cell multi-omics data from various modalities like RNA-seq and ATAC-seq | 16 |
cellgeni/scrna.seq.course | An educational resource teaching computational analysis of single-cell RNA-seq data using R and Bioconductor tools | 123 |
hms-dbmi/scde | Provides statistical methods for analyzing single-cell RNA-seq data, focusing on error modeling and differential expression analysis. | 173 |
sentinal4d/cellshape | Analyzes 3D cell shape features using deep learning for cancer research | 21 |
scverse/scirpy | Analyzes single-cell TCR and BCR data from scRNA-seq using Python | 220 |
scverse/squidpy | A Python library for analyzing and visualizing spatial molecular data from single-cell genomics and tissue images | 440 |
kharchenkolab/numbat | Analyzes single-cell RNA-seq data to detect allele-specific copy number variations and infer lineage relationships in cancer cells | 166 |
lingfeiwang/normalisr | A software framework for analyzing single-cell RNA sequencing data | 18 |
sccaf/sccaf | Automated method for identifying putative cell types from single-cell RNA-seq data using clustering and machine learning | 93 |
imb-computational-genomics-lab/ascend | Tools and methods for analyzing single-cell RNA sequencing data, including expression normalization and differential gene expression analysis. | 22 |
snakemake-workflows/single-cell-rna-seq | A workflow generator for single-cell RNA-seq data analysis | 97 |
zjufanlab/sccatch | Automated tool for annotating cell types from single-cell RNA sequencing data based on marker genes | 218 |
scrna-seq/tasc | A toolkit for analyzing single-cell RNA sequencing data using computational methods and algorithms | 2 |