scTDA
Single-cell RNA-seq analyzer
An object-oriented Python library for analyzing single-cell RNA-seq data using topological representations
An object oriented python library for topological data analysis of high-throughput single-cell RNA-seq data
7 stars
6 watching
8 forks
Language: Python
last commit: about 9 years agoLinked from 1 awesome list
seandavi/awesome-single-cellRelated projects:
| Repository | Description | Stars |
|---|---|---|
 snakemake-workflows/single-cell-rna-seq | A workflow generator for single-cell RNA-seq data analysis | 100 |
 yjzhang/uncurl_python | Analyzes single-cell RNA-seq data using statistical models and machine learning algorithms | 15 |
 scrna-seq/tasc | A toolkit for analyzing single-cell RNA sequencing data using computational methods and algorithms | 2 |
 iosonofabio/singlet | Analyzes single cell RNA sequence data with quantitative phenotypes | 13 |
 nasqar/seuratv3wizard | An R-based web application for guided single-cell RNA-seq data analysis and clustering | 33 |
 catavallejos/basics | An integrated Bayesian hierarchical model to analyze single-cell sequencing data | 84 |
 jhu99/scbean | Analyzes single-cell multi-omics data from various modalities like RNA-seq and ATAC-seq | 16 |
 elementolab/sctcrseq | An open-source Python pipeline for processing single-cell RNA sequencing data to recover T cell receptor sequences. | 26 |
 kharchenkolab/dropest | A software pipeline for analyzing single-cell RNA-seq data from droplet-based experiments | 88 |
| nasqar/seuratwizard | A web-based interactive application for guided single-cell RNA-seq data analysis and clustering using Seurat. | 13 |
 hms-dbmi/scde | Provides statistical methods for analyzing single-cell RNA-seq data, focusing on error modeling and differential expression analysis. | 173 |
 nbisweden/workshop-scrnaseq | An educational resource offering interactive R, Python, and Seurat labs for analyzing single-cell RNA sequencing data. | 199 |
 rglab/mast | Provides tools and methods for analyzing single-cell RNA sequencing data using statistical models | 228 |
 pachterlab/kb_python | A Python package that provides a unified interface to multiple pre-processing workflows for single-cell RNA-seq data. | 157 |
 crazyhottommy/rna-seq-analysis | A collection of resources and tools for analyzing RNA sequencing data using Python and Snakemake workflows | 951 |