SCP
Single-cell pipeline
A comprehensive single-cell analysis pipeline with integrated tools for data processing and downstream analysis.
An end-to-end Single-Cell Pipeline designed to facilitate comprehensive analysis and exploration of single-cell data.
407 stars
8 watching
88 forks
Language: R
last commit: 10 months ago
Linked from 1 awesome list
anndatascanpyscatac-seqscrna-pipelinescrna-seqscrna-seq-analysisseuratseurat-objectsshiny-appshiny-appsshinyappssingle-cellsingle-cell-analysissingle-cell-atac-seqsingle-cell-genomicssingle-cell-omicssingle-cell-pipelinesingle-cell-rna-seqsingle-cell-sequencing
Related projects:
Repository | Description | Stars |
---|---|---|
| A software pipeline for analyzing single-cell RNA-seq data from droplet-based experiments | 88 |
| A toolkit for analyzing single-cell RNA sequencing data using computational methods and algorithms | 2 |
| Automated tool for annotating cell types from single-cell RNA sequencing data based on marker genes | 219 |
| A package for processing and visualizing single-cell RNA-seq data in R, providing an efficient and customizable framework for analyzing complex biological datasets. | 60 |
| Analyzes single-cell multi-omics data from various modalities like RNA-seq and ATAC-seq | 16 |
| Analyzes single cell RNA sequence data with quantitative phenotypes | 13 |
| An educational resource teaching computational analysis of single-cell RNA-seq data using R and Bioconductor tools | 125 |
| Probabilistic analysis tools for single-cell omics data | 1,270 |
| An R-based web application for guided single-cell RNA-seq data analysis and clustering | 33 |
| A tool for accurately annotating cell types in single-cell RNA sequencing data using deep learning | 100 |
| An integrated Bayesian hierarchical model to analyze single-cell sequencing data | 84 |
| Provides statistical methods for analyzing single-cell RNA-seq data, focusing on error modeling and differential expression analysis. | 173 |
| An educational workshop on single-cell RNA-seq analysis using the Seurat R package | 0 |
| Tools and methods for analyzing single-cell RNA sequencing data, including expression normalization and differential gene expression analysis. | 22 |
| A workflow generator for single-cell RNA-seq data analysis | 100 |