GLUE
Single-cell integration tool
A software framework for integrating multi-omics data from single cells
Graph-linked unified embedding for single-cell multi-omics data integration
388 stars
8 watching
58 forks
Language: Python
last commit: over 2 years agoLinked from 1 awesome list
bioinformaticsdeep-learningsingle-cellsingle-cell-multiomics
seandavi/awesome-single-cellRelated projects:
| Repository | Description | Stars |
|---|---|---|
| gao-lab/slat | A software package for aligning single-cell spatial omics data using deep learning and graph neural networks | 83 |
 welch-lab/liger | An R package for integrating and analyzing multiple single-cell datasets using nonnegative-matrix factorization | 397 |
 bowang-lab/scgpt | A Jupyter Notebook-based framework for training and applying generative AI models to single-cell multi-omics data | 1,064 |
| gao-lab/cell_blast | An open-source tool for querying and annotating large-scale single-cell RNA-seq data using similarity searches. | 87 |
 kchen-lab/bindsc | A tool for integrating multi-omics data from single cell sequencing technologies to improve analysis accuracy and discovery of biological patterns. | 34 |
 teichlab/gpfates | Software to model transcriptional cell fates as mixtures of Gaussian Processes | 19 |
 euxhenh/cellar | An interactive software tool for analyzing single-cell omics data | 32 |
 hemberg-lab/sc3 | A tool for clustering cells from single cell RNA-Seq experiments | 121 |
 yulab-smu/ggsc | A package for visualizing single cell and spatial transcriptomics data using R | 43 |
 pachterlab/cwgflhgcchap_2021 | Analyzing multiplexed single-cell RNA-seq data from a marine organism, providing tools for preprocessing, clustering, and analysis of gene expression across different cell types. | 2 |
 tanaylab/metacell | An R package that facilitates analysis of single-cell RNA-seq data by identifying homogeneous groups of cells. | 110 |
 yoseflab/fastproject | Provides tools and methods for visualizing and analyzing single cell RNA-seq data in low dimensions | 35 |
 zjufanlab/scdeepsort | A tool for accurately annotating cell types in single-cell RNA sequencing data using deep learning | 100 |
 jhu99/scbean | Analyzes single-cell multi-omics data from various modalities like RNA-seq and ATAC-seq | 16 |
 timoast/sinto | Tools for analyzing aligned single-cell data from sequencing experiments | 118 |