liger
single-cell data integration tool
An R package for integrating and analyzing multiple single-cell datasets using nonnegative-matrix factorization
R package for integrating and analyzing multiple single-cell datasets
397 stars
22 watching
78 forks
Language: R
last commit: 4 months ago
Linked from 1 awesome list
nonnegative-matrix-factorizationrsingle-cell
seandavi/awesome-single-cellRelated projects:
| Repository | Description | Stars |
|---|---|---|
 gao-lab/glue | A software framework for integrating multi-omics data from single cells | 388 |
 tanaylab/metacell | An R package that facilitates analysis of single-cell RNA-seq data by identifying homogeneous groups of cells. | 110 |
 martaint/intercellar | An interactive R/Shiny app for analyzing cell-cell communication from single-cell transcriptomics data | 9 |
 xmc811/scillus | A package for processing and visualizing single-cell RNA-seq data in R, providing an efficient and customizable framework for analyzing complex biological datasets. | 60 |
 yangzi4/inmf | A software framework for nonnegative matrix factorization and its application to multi-modal omics data analysis | 17 |
 kimjingu/nonnegfac-matlab | Provides a collection of algorithms for nonnegative matrix and tensor factorizations. | 57 |
 drisso/bioc2016singlecell | Analyzing single-cell RNA-seq data using R and Bioconductor tools | 76 |
 euxhenh/cellar | An interactive software tool for analyzing single-cell omics data | 32 |
 yulab-smu/ggsc | A package for visualizing single cell and spatial transcriptomics data using R | 43 |
 nasqar/seuratv3wizard | An R-based web application for guided single-cell RNA-seq data analysis and clustering | 33 |
 rglab/mast | Provides tools and methods for analyzing single-cell RNA sequencing data using statistical models | 228 |
 imb-computational-genomics-lab/ascend | Tools and methods for analyzing single-cell RNA sequencing data, including expression normalization and differential gene expression analysis. | 22 |
 hemberg-lab/sc3 | A tool for clustering cells from single cell RNA-Seq experiments | 121 |
 robertaboukhalil/ginkgo | An analysis tool for single-cell copy-number variation data from sequencing experiments. | 47 |
 batzogloulabsu/simlr | An implementation of a machine learning method for analyzing single-cell RNA-seq data, providing tools for dimension reduction, clustering, and visualization. | 110 |