liger

single-cell data integration tool

An R package for integrating and analyzing multiple single-cell datasets using nonnegative-matrix factorization

R package for integrating and analyzing multiple single-cell datasets

GitHub

390 stars
22 watching
78 forks
Language: R
last commit: 7 days ago
Linked from 1 awesome list

nonnegative-matrix-factorizationrsingle-cell

Backlinks from these awesome lists:

Related projects:

Repository Description Stars
gao-lab/glue A software framework for integrating multi-omics data from single cells 382
tanaylab/metacell An R package that facilitates analysis of single-cell RNA-seq data by identifying homogeneous groups of cells. 108
martaint/intercellar An interactive R/Shiny app for analyzing cell-cell communication from single-cell transcriptomics data 9
xmc811/scillus A package for processing and visualizing single-cell RNA-seq data in R, providing an efficient and customizable framework for analyzing complex biological datasets. 53
yangzi4/inmf A software framework for nonnegative matrix factorization and its application to multi-modal omics data analysis 16
kimjingu/nonnegfac-matlab Provides a collection of algorithms for nonnegative matrix and tensor factorizations. 57
drisso/bioc2016singlecell Analyzing single-cell RNA-seq data using R and Bioconductor tools 77
euxhenh/cellar An interactive software tool for analyzing single-cell omics data 31
yulab-smu/ggsc A package for visualizing single cell and spatial transcriptomics data using R 43
nasqar/seuratv3wizard An R-based web application for guided single-cell RNA-seq data analysis and clustering 33
rglab/mast Provides tools and methods for analyzing single-cell RNA sequencing data using statistical models 228
imb-computational-genomics-lab/ascend Tools and methods for analyzing single-cell RNA sequencing data, including expression normalization and differential gene expression analysis. 22
hemberg-lab/sc3 A tool for clustering cells from single cell RNA-Seq experiments 119
robertaboukhalil/ginkgo An analysis tool for single-cell copy-number variation data from sequencing experiments. 47
batzogloulabsu/simlr An implementation of a machine learning method for analyzing single-cell RNA-seq data, providing tools for dimension reduction, clustering, and visualization. 109