alevin-fry

Sequence analyzer

A toolset for processing single-cell sequencing data from RNA-seq and other sources with an emphasis on efficiency, accuracy, and memory frugality.

🐟 🔬🦀 alevin-fry is an efficient and flexible tool for processing single-cell sequencing data, currently focused on single-cell transcriptomics and feature barcoding.

GitHub

169 stars
9 watching
15 forks
Language: Rust
last commit: 7 days ago
Linked from 1 awesome list

10xquantificationrna-seqrustsingle-cellsingle-cell-rna-seqtranscriptomics

Backlinks from these awesome lists:

Related projects:

Repository Description Stars
nasqar/seuratv3wizard An R-based web application for guided single-cell RNA-seq data analysis and clustering 33
nasqar/seuratwizard A web-based interactive application for guided single-cell RNA-seq data analysis and clustering using Seurat. 13
nf-core/rnaseq An RNA sequencing analysis pipeline that performs quality control, trimming, alignment, and quantification of gene expression from raw sequencing data. 916
yoseflab/trapes Algorithmic software for analyzing single-cell RNA sequencing data to reconstruct T cell receptor sequences. 14
iosonofabio/singlet Analyzes single cell RNA sequence data with quantitative phenotypes 13
snakemake-workflows/single-cell-rna-seq A workflow generator for single-cell RNA-seq data analysis 97
dtm2451/dittoseq A suite of functions for analyzing and visualizing RNA sequencing data 190
hallvaaw/scifer Analyze single cell mRNA expression at specific genomic loci using read alignment and filtering techniques 0
yunshun/singlecellworkshop An educational workshop on single-cell RNA-seq analysis using the Seurat R package 0
kharchenkolab/numbat Analyzes single-cell RNA-seq data to detect allele-specific copy number variations and infer lineage relationships in cancer cells 166
zjufanlab/sccatch Automated tool for annotating cell types from single-cell RNA sequencing data based on marker genes 218
xmc811/scillus A package for processing and visualizing single-cell RNA-seq data in R, providing an efficient and customizable framework for analyzing complex biological datasets. 53
jhu99/scbean Analyzes single-cell multi-omics data from various modalities like RNA-seq and ATAC-seq 16
imb-computational-genomics-lab/ascend Tools and methods for analyzing single-cell RNA sequencing data, including expression normalization and differential gene expression analysis. 22
ucarlab/iasva An R package that identifies hidden factors in data to uncover sources of variation 8