indrop
Transcriptome analyzer
A software pipeline for analyzing single-cell transcriptome data using the DropEST tool.
Single cell transcriptome analysis pipeline based on DropEst
6 stars
4 watching
5 forks
Language: Nextflow
last commit: almost 7 years agoLinked from 1 awesome list
nextflow-io/awesome-nextflowRelated projects:
| Repository | Description | Stars |
|---|---|---|
| biocorecrg/mop2 | A Nextflow-based workflow for processing and analyzing Oxford Nanopore direct RNA sequencing data | 23 |
| biocorecrg/master_of_pores | An open-source Nextflow pipeline for analyzing Nanopore sequencing data from various types of RNA sequences. | 95 |
| biocorecrg/vectorqc | Analyzes DNA sequencing data from circular vectors to generate annotated maps and GenBank files. | 5 |
| biocorecrg/allele_specific_rnaseq | A workflow for analyzing allele-specific RNA-seq data using Nextflow and various bioinformatics tools | 10 |
| biocorecrg/transcriptome_assembly | De novo and reference-based transcriptome assembly workflow using Nextflow | 3 |
 nghiavtr/bpsc | A package for analyzing single-cell RNA-seq data using a beta-Poisson model. | 16 |
 averasd/nextflow-rnastar | A Nextflow pipeline for analyzing transcriptome data using STAR and featurecounts | 4 |
 kharchenkolab/dropest | A software pipeline for analyzing single-cell RNA-seq data from droplet-based experiments | 88 |
 kieranrcampbell/embeddr | Analyzes single-cell RNA-seq data using pseudotemporal ordering and clustering | 12 |
| biocorecrg/exorthist | A pipeline to infer exon orthology groups at all evolutionary distances | 21 |
 jminnier/startapp | An interactive web-based application for analyzing and visualizing transcriptome data. | 90 |
 drisso/bioc2016singlecell | Analyzing single-cell RNA-seq data using R and Bioconductor tools | 76 |
 imb-computational-genomics-lab/ascend | Tools and methods for analyzing single-cell RNA sequencing data, including expression normalization and differential gene expression analysis. | 22 |
 bcbio/bcbio-nextgen | A high-level configuration file drives parallel variant calling and analysis on sequencing data. | 995 |
 immcore/is-cellr | A web-based Shiny application for analyzing single-cell RNA sequencing data | 23 |