master_of_pores

biocorecrg/mop223

RNA seq pipeline

A Nextflow-based workflow for processing and analyzing Oxford Nanopore direct RNA sequencing data

nextflow-io/crg-course-nov1623

RNA sequencing pipeline

A tutorial project on using Nextflow and Docker for implementing a RNA-Seq pipeline

nf-core/smrnaseq74

RNA seq processor

An automated analysis pipeline for small RNA sequencing data

guigolab/grape-nf37

RNA-seq pipeline

Automated RNA-seq analysis pipeline using Nextflow and Docker/Singularity containers

nf-core/lncpipe34

RNA analyzer

Analyzes long non-coding RNA molecules from RNA-seq data

biocorecrg/indrop6

Transcriptome analyzer

A software pipeline for analyzing single-cell transcriptome data using the DropEST tool.

nf-core/rnafusion147

Gene fusion analyzer

A bioinformatics pipeline for detecting and analyzing gene fusions from RNA sequencing data

fredericlemoine/rna-pipeline4

RNA pipeline

A Nextflow-based pipeline for processing RNA-Seq data using Docker containers

biocorecrg/allele_specific_rnaseq10

RNAseq analyzer

A workflow for analyzing allele-specific RNA-seq data using Nextflow and various bioinformatics tools

nf-core/rnaseq941

RNA seq analyzer

An RNA sequencing analysis pipeline that performs quality control, trimming, alignment, and quantification of gene expression from raw sequencing data.

averasd/nextflow-rnastar4

Transcriptome analyzer

A Nextflow pipeline for analyzing transcriptome data using STAR and featurecounts

biocorecrg/vectorqc5

DNA analysis pipeline

Analyzes DNA sequencing data from circular vectors to generate annotated maps and GenBank files.

biocorecrg/bionextflow26

Pipeline framework

A collection of reusable modules and sub-workflows for Nextflow pipelines in bioinformatics

dowell-lab/rnaseq-flow8

RNA seq processor

A Nextflow pipeline for processing RNA-seq data

bcbio/bcbio-nextgen995

Seq analysis pipeline

A high-level configuration file drives parallel variant calling and analysis on sequencing data.