master_of_pores

Nanopore RNA sequencer

An open-source Nextflow pipeline for analyzing Nanopore sequencing data from various types of RNA sequences.

Nextflow pipeline for analysis of direct RNA Nanopore reads

GitHub

95 stars
9 watching
16 forks
Language: Nextflow
last commit: about 1 month ago
Linked from 1 awesome list

dockernanopore-analysis-pipelinenanopore-sequencingnextflownextflow-pipelinesingularity

Backlinks from these awesome lists:

Related projects:

Repository Description Stars
biocorecrg/mop2 A Nextflow-based workflow for processing and analyzing Oxford Nanopore direct RNA sequencing data 23
nextflow-io/crg-course-nov16 A tutorial project on using Nextflow and Docker for implementing a RNA-Seq pipeline 23
nf-core/smrnaseq An automated analysis pipeline for small RNA sequencing data 74
guigolab/grape-nf Automated RNA-seq analysis pipeline using Nextflow and Docker/Singularity containers 37
nf-core/lncpipe Analyzes long non-coding RNA molecules from RNA-seq data 34
biocorecrg/indrop A software pipeline for analyzing single-cell transcriptome data using the DropEST tool. 6
nf-core/rnafusion A bioinformatics pipeline for detecting and analyzing gene fusions from RNA sequencing data 147
fredericlemoine/rna-pipeline A Nextflow-based pipeline for processing RNA-Seq data using Docker containers 4
biocorecrg/allele_specific_rnaseq A workflow for analyzing allele-specific RNA-seq data using Nextflow and various bioinformatics tools 10
nf-core/rnaseq An RNA sequencing analysis pipeline that performs quality control, trimming, alignment, and quantification of gene expression from raw sequencing data. 941
averasd/nextflow-rnastar A Nextflow pipeline for analyzing transcriptome data using STAR and featurecounts 4
biocorecrg/vectorqc Analyzes DNA sequencing data from circular vectors to generate annotated maps and GenBank files. 5
biocorecrg/bionextflow A collection of reusable modules and sub-workflows for Nextflow pipelines in bioinformatics 26
dowell-lab/rnaseq-flow A Nextflow pipeline for processing RNA-seq data 8
bcbio/bcbio-nextgen A high-level configuration file drives parallel variant calling and analysis on sequencing data. 995