master_of_pores
Nanopore RNA sequencer
An open-source Nextflow pipeline for analyzing Nanopore sequencing data from various types of RNA sequences.
Nextflow pipeline for analysis of direct RNA Nanopore reads
95 stars
9 watching
16 forks
Language: Nextflow
last commit: 2 months ago
Linked from 1 awesome list
dockernanopore-analysis-pipelinenanopore-sequencingnextflownextflow-pipelinesingularity
Related projects:
Repository | Description | Stars |
---|---|---|
| A Nextflow-based workflow for processing and analyzing Oxford Nanopore direct RNA sequencing data | 23 |
| A tutorial project on using Nextflow and Docker for implementing a RNA-Seq pipeline | 23 |
| An automated analysis pipeline for small RNA sequencing data | 74 |
| Automated RNA-seq analysis pipeline using Nextflow and Docker/Singularity containers | 37 |
| Analyzes long non-coding RNA molecules from RNA-seq data | 34 |
| A software pipeline for analyzing single-cell transcriptome data using the DropEST tool. | 6 |
| A bioinformatics pipeline for detecting and analyzing gene fusions from RNA sequencing data | 147 |
| A Nextflow-based pipeline for processing RNA-Seq data using Docker containers | 4 |
| A workflow for analyzing allele-specific RNA-seq data using Nextflow and various bioinformatics tools | 10 |
| An RNA sequencing analysis pipeline that performs quality control, trimming, alignment, and quantification of gene expression from raw sequencing data. | 941 |
| A Nextflow pipeline for analyzing transcriptome data using STAR and featurecounts | 4 |
| Analyzes DNA sequencing data from circular vectors to generate annotated maps and GenBank files. | 5 |
| A collection of reusable modules and sub-workflows for Nextflow pipelines in bioinformatics | 26 |
| A Nextflow pipeline for processing RNA-seq data | 8 |
| A high-level configuration file drives parallel variant calling and analysis on sequencing data. | 995 |