nf_wochenende
Metagenomics analyzer
A tool for analyzing metagenomic data by aligning short or long reads against a reference sequence and generating reports on bacterial growth and abundance
A nextflow version of the Wochenende reference metagenome binning and visualization pipeline
13 stars
1 watching
2 forks
Language: Python
last commit: about 1 month ago
Linked from 1 awesome list
nextflow-io/awesome-nextflowRelated projects:
| Repository | Description | Stars |
|---|---|---|
 metagenomics/meragene | An open-source software pipeline that uses Hidden-Markov-Models to identify genes in metagenomics data and provide reliable results | 4 |
 pachterlab/cwgflhgcchap_2021 | Analyzing multiplexed single-cell RNA-seq data from a marine organism, providing tools for preprocessing, clustering, and analysis of gene expression across different cell types. | 2 |
 nf-core/mag | An assembly and binning pipeline for analyzing metagenomes | 216 |
 sigven/pcgr | Software tool for annotating and interpreting cancer genome data to support precision oncology | 254 |
 wittelab/orchid | An annotation and machine learning framework for analyzing cancer mutations | 31 |
 chrisquince/desman | Software for analyzing genetic data from environmental samples to infer the presence of specific strains | 69 |
 alesssia/yamp | An open-source software framework for automating the analysis of metagenomic data | 56 |
 lkremer/scbs | A command-line tool for analyzing single-cell DNA methylation data | 11 |
 jtaghiyar/kronos | Tools and workflow management for large-scale genome data analysis | 19 |
 lanagarmire/ssrge | A Python package that performs sparse linear model fitting on gene expression data and SNV matrices. | 33 |
 zuberlab/mageck-nf | Analyzes multiplexed CRISPR/shRNA Screens using statistical methods | 3 |
 odiogosilva/innuca-nf | A software framework for implementing high-quality assembly, quality control, and annotation of bacterial genomes | 3 |
 klugem/watchdog | A workflow management system for analyzing large-scale experimental data in bioinformatics | 13 |
 schmollerlab/cell_acdc | A Python framework for analyzing and annotating microscopy data | 133 |
 zeeev/wham | Software tool for detecting and analyzing structural variants in genomes | 103 |