YAMP

Metagenomics toolset

An open-source software framework for automating the analysis of metagenomic data

YAMP: Yet Another Metagenomic Pipeline

GitHub

57 stars
7 watching
28 forks
Language: Nextflow
last commit: over 3 years ago
Linked from 1 awesome list


Backlinks from these awesome lists:

Related projects:

RepositoryDescriptionStars
mhh-rcug/nf_wochenendeA tool for analyzing metagenomic data by aligning short or long reads against a reference sequence and generating reports on bacterial growth and abundance13
fabian-jung/tsmpTool to generate meta-programming capabilities from source code analysis97
metagenomics/merageneAn open-source software pipeline that uses Hidden-Markov-Models to identify genes in metagenomics data and provide reliable results4
andersenlab/cegwas2-nfA software framework for genomic association studies using C. elegans data8
zeeev/whamSoftware tool for detecting and analyzing structural variants in genomes104
leosmigel/analyzingalphaAnalyzes and processes Alpha data to extract insights481
meissnert/nextflow-gtoolAn integration of NextFlow with the GTool software to enable automated genomics workflow management and analysis2
chrisquince/desmanSoftware for analyzing genetic data from environmental samples to infer the presence of specific strains69
andremrsantos/next-pipes-lghmA collection of Nextflow pipelines for analyzing NGS data from the LGHM bioinformatics lab3
metastem/wikilessA Wikipedia front-end alternative focused on user privacy, built using CSS.179
bactopia/bactopiaAn automated pipeline for analyzing bacterial genomes using a flexible workflow423
juliadata/dataframesmeta.jlTools for meta-programming DataFrames objects.480
robsyme/nextflow-annotateA workflow repository providing tools and recipes for genome annotation using NextFlow20
a0rtega/metameGenerates mutated versions of executable files to evade pattern recognition by antivirus software569
aprilyuge/scaanetA deep learning-based framework for analyzing single-cell RNA-seq data14