MeRaGENE
Gene finder
An open-source software pipeline that uses Hidden-Markov-Models to identify genes in metagenomics data and provide reliable results
4 stars
5 watching
2 forks
Language: Python
last commit: about 8 years agoLinked from 1 awesome list
nextflow-io/awesome-nextflowRelated projects:
| Repository | Description | Stars |
|---|---|---|
 mhh-rcug/nf_wochenende | A tool for analyzing metagenomic data by aligning short or long reads against a reference sequence and generating reports on bacterial growth and abundance | 13 |
 gevaertlab/amaretto | An algorithm for identifying cancer driver genes by integrating multi-omics data and penalized regression | 16 |
 lanagarmire/ssrge | A Python package that performs sparse linear model fitting on gene expression data and SNV matrices. | 33 |
 edward130603/bayesspace | A Bayesian model for clustering and enhancing spatial gene expression data | 114 |
 jefworks-lab/honeybadger | An R package that uses Bayesian inference and hidden Markov models to detect genetic variations in single-cell RNA-seq data | 98 |
 pachterlab/gget | Enables efficient querying of genomic databases using a modular approach and multiple tools | 955 |
 ugeneunipro/ugene | Bioinformatics software suite for analyzing DNA sequences and pipelines. | 218 |
 m-decoster/rsgenetic | A framework for executing genetic algorithms in Rust | 75 |
 zqfang/gseapy | A software package for performing gene set enrichment analysis in various types of biological data. | 580 |
 chrisquince/desman | Software for analyzing genetic data from environmental samples to infer the presence of specific strains | 69 |
 sigven/pcgr | Software tool for annotating and interpreting cancer genome data to support precision oncology | 256 |
 adaptivegenome/openge | An open-source platform for high-throughput sequencing data analysis and manipulation. | 26 |
 alesssia/yamp | An open-source software framework for automating the analysis of metagenomic data | 57 |
 wittelab/orchid | An annotation and machine learning framework for analyzing cancer mutations | 31 |
 chenmengjie/viper | A software package implementing a method to impute missing values in gene expression data using a penalized regression model | 18 |