alevin-fry
Sequence analyzer
A toolset for processing single-cell sequencing data from RNA-seq and other sources with an emphasis on efficiency, accuracy, and memory frugality.
🐟 🔬🦀 alevin-fry is an efficient and flexible tool for processing single-cell sequencing data, currently focused on single-cell transcriptomics and feature barcoding.
169 stars
9 watching
15 forks
Language: Rust
last commit: 8 days ago
Linked from 1 awesome list
10xquantificationrna-seqrustsingle-cellsingle-cell-rna-seqtranscriptomics
seandavi/awesome-single-cellRelated projects:
| Repository | Description | Stars |
|---|---|---|
 nasqar/seuratv3wizard | An R-based web application for guided single-cell RNA-seq data analysis and clustering | 33 |
| nasqar/seuratwizard | A web-based interactive application for guided single-cell RNA-seq data analysis and clustering using Seurat. | 13 |
 nf-core/rnaseq | An RNA sequencing analysis pipeline that performs quality control, trimming, alignment, and quantification of gene expression from raw sequencing data. | 916 |
 yoseflab/trapes | Algorithmic software for analyzing single-cell RNA sequencing data to reconstruct T cell receptor sequences. | 14 |
 iosonofabio/singlet | Analyzes single cell RNA sequence data with quantitative phenotypes | 13 |
 snakemake-workflows/single-cell-rna-seq | A workflow generator for single-cell RNA-seq data analysis | 97 |
 dtm2451/dittoseq | A suite of functions for analyzing and visualizing RNA sequencing data | 190 |
 hallvaaw/scifer | Analyze single cell mRNA expression at specific genomic loci using read alignment and filtering techniques | 0 |
 yunshun/singlecellworkshop | An educational workshop on single-cell RNA-seq analysis using the Seurat R package | 0 |
 kharchenkolab/numbat | Analyzes single-cell RNA-seq data to detect allele-specific copy number variations and infer lineage relationships in cancer cells | 166 |
 zjufanlab/sccatch | Automated tool for annotating cell types from single-cell RNA sequencing data based on marker genes | 218 |
 xmc811/scillus | A package for processing and visualizing single-cell RNA-seq data in R, providing an efficient and customizable framework for analyzing complex biological datasets. | 53 |
 jhu99/scbean | Analyzes single-cell multi-omics data from various modalities like RNA-seq and ATAC-seq | 16 |
 imb-computational-genomics-lab/ascend | Tools and methods for analyzing single-cell RNA sequencing data, including expression normalization and differential gene expression analysis. | 22 |
 ucarlab/iasva | An R package that identifies hidden factors in data to uncover sources of variation | 8 |