cegwas2-nf
GWAS tool
A software framework for genomic association studies using C. elegans data
GWA mapping with C. elegans
8 stars
9 watching
6 forks
Language: R
last commit: 6 months ago
Linked from 1 awesome list
nextflow
nextflow-io/awesome-nextflowRelated projects:
| Repository | Description | Stars |
|---|---|---|
 jespermaag/gganatogram | An R package for visualizing anatograms of different organisms based on tissue coordinates from publicly available data sources. | 384 |
 h3abionet/h3agwas | A comprehensive human genome-wide association study workflow for data quality control and basic association testing. | 107 |
 pachterlab/gget | Enables efficient querying of genomic databases using a modular approach and multiple tools | 950 |
 meissnert/nextflow-gtool | An integration of NextFlow with the GTool software to enable automated genomics workflow management and analysis | 2 |
 openfheorg/openfhe-genomic-examples | An implementation of logistic regression and Chi-Square genome-wide association studies protocols using homomorphic encryption for secure large-scale genomic research. | 9 |
 nf-core/sarek | Automated workflow for detecting germline or somatic variants in genomic sequencing data | 410 |
 guigolab/grape-nf | Automated RNA-seq analysis pipeline using Nextflow and Docker/Singularity containers | 37 |
 crg-cnag/callings-nf | A Nextflow pipeline for RNA sequencing variant calling with GATK best practices | 132 |
 galadrielbriere/clustomics | An open-source software tool for applying consensus clustering to multi-omic data for disease subtyping | 5 |
 brwnj/smoove-nf | An automation workflow for detecting structural variations in genomic data using the smoove toolset | 12 |
 evanfloden/vast-tools-nf | A Nextflow implementation of VAST-TOOLS for profiling alternative splicing events in RNA-Seq data | 5 |
| guigolab/chip-nf | Automated pipeline for processing ChIP-seq data | 17 |
 azvoleff/gfcanalysis | Tools and analyses for working with Hansen et al.'s Global Forest Change dataset | 17 |
 ellisp/ggflags | A R package that adds flags to ggplot2 plots | 18 |
 nbisweden/wgs-structvar | A Nextflow pipeline for running structural variation callers on whole genome sequencing data | 15 |