CellphoneDB

Cell Signaling Database

A comprehensive database of human cell signaling interactions and their relevance to single-cell transcriptomics data analysis

CellPhoneDB can be used to search for a particular ligand/receptor, or interrogate your own HUMAN single-cell transcriptomics data.

GitHub

335 stars
10 watching
53 forks
Language: Jupyter Notebook
last commit: about 1 month ago
Linked from 1 awesome list


Backlinks from these awesome lists:

Related projects:

Repository Description Stars
saezlab/liana An R-based framework to analyze cell-cell communication from single-cell RNA-Seq data by integrating multiple methods and resources 182
zjufanlab/spatalk An R package that infers cell-cell communication and ligand-receptor-target networks from spatially resolved transcriptomic data 62
mathewchamberlain/signacx Classifies cellular phenotype from single-cell RNA sequencing data using neural networks trained on bulk gene expression data. 23
celldynamics/quimp Software for analyzing cellular shape changes and fluorescent reporter distributions in real-time 7
yeolab/flotilla A platform for collaborative analysis of large RNA expression datasets 123
timoast/sinto Tools for analyzing aligned single-cell data from sequencing experiments 118
maximilianh/cellbrowser A tool for visualizing and analyzing single-cell datasets with interactive features. 105
gao-lab/cell_blast An open-source tool for querying and annotating large-scale single-cell RNA-seq data using similarity searches. 86
klarman-cell-observatory/scsva Software package for interactive analysis and visualization of large single-cell omics datasets 25
saeyslab/nichenetr Predicts ligand-receptor interactions based on gene expression data and integrates prior knowledge to model intercellular communication. 487
cabsel/calista Analyzes single cell expression data to infer cellular lineages and clustering structures 9
vanvalenlab/deepcell-tf A deep learning library for analyzing biological images at the single-cell level 424
menchelab/bioprofiling.jl A Julia toolkit for analyzing high-dimensional cellular profiles 13
scialdonelab/comunet An exploratory tool for analyzing intercellular communication from single-cell transcriptional data. 12
antoniodefalco/scevan Automated tool for classifying cells in scRNA data and inferring copy number profiles of malignant cells. 93