openmicroscopy

Microscopy data manager

Develops software and data format standards for the storage and manipulation of biological microscopy data.

OME (Open Microscopy Environment) develops open-source software and data format standards for the storage and manipulation of biological light microscopy data. A joint project between universities, research establishments and industry in Europe and the USA, OME has over 20 active researchers with strong links to the microscopy community. Funded by private and public research grants, OME has been a major force on the international microscopy stage since 2000.

GitHub

202 stars
31 watching
102 forks
Language: Java
last commit: about 2 months ago
Linked from 1 awesome list

databaseimagejavaomeropythonserver

Backlinks from these awesome lists:

Related projects:

Repository Description Stars
allencellmodeling/aicsimageio Provides Python tools for reading, writing and managing microscopy images 207
hohlbeinlab/openmicroscopy A collection of resources and projects facilitating collaboration and sharing in the field of microscopy 135
python-microscopy/python-microscopy An application suite for light microscopy acquisition, data storage, visualization, and analysis 85
zeiss-microscopy/oad Automating microscopy workflows using Python and Open Application Development tools 129
open-science-tools/nd2reader A software package for reading microscopy images and metadata from NIS Elements files 45
pycroscopy/atomai A PyTorch-based package for analyzing microscopy data with machine learning algorithms 197
oeg-upm/morph-ome An online tool for mapping ontologies and generating standardized metadata formats 11
openmole/openmole A platform that enables scalable and transparent exploration of simulation models using high-throughput computing 144
marcosimioni/omigood Automated scanner for detecting vulnerable Linux VMs in Azure environments. 18
open-mmlab/mmengine Provides a flexible and configurable framework for training deep learning models with PyTorch. 1,196
danielmartensson/opensourcelogger Software for collecting and analyzing measurement data from industrial equipment. 18
openems/openems An open-source energy management system platform designed to monitor and control various devices and services related to renewable energy sources 835
volume-em/empanada A tool for training and deploying panoptic segmentation models on 2D and 3D images in electron microscopy 2
choderalab/openmmtools A toolkit providing tools and methods for simulating molecular systems using the OpenMM engine 255
vrrenske/bactmap A package for analyzing and visualizing microscopy data, integrating segmentation tools with Rstats and ggplot2. 4