openmicroscopy
Microscopy data manager
Develops software and data format standards for the storage and manipulation of biological microscopy data.
OME (Open Microscopy Environment) develops open-source software and data format standards for the storage and manipulation of biological light microscopy data. A joint project between universities, research establishments and industry in Europe and the USA, OME has over 20 active researchers with strong links to the microscopy community. Funded by private and public research grants, OME has been a major force on the international microscopy stage since 2000.
202 stars
31 watching
102 forks
Language: Java
last commit: almost 2 years agoLinked from 1 awesome list
databaseimagejavaomeropythonserver
kakoni/awesome-healthcareRelated projects:
| Repository | Description | Stars |
|---|---|---|
 allencellmodeling/aicsimageio | Provides Python tools for reading, writing and managing microscopy images | 207 |
 hohlbeinlab/openmicroscopy | A collection of resources and projects facilitating collaboration and sharing in the field of microscopy | 135 |
 python-microscopy/python-microscopy | An application suite for light microscopy acquisition, data storage, visualization, and analysis | 85 |
 zeiss-microscopy/oad | Automating microscopy workflows using Python and Open Application Development tools | 129 |
 open-science-tools/nd2reader | A software package for reading microscopy images and metadata from NIS Elements files | 45 |
 pycroscopy/atomai | A PyTorch-based package for analyzing microscopy data with machine learning algorithms | 197 |
 oeg-upm/morph-ome | An online tool for mapping ontologies and generating standardized metadata formats | 11 |
 openmole/openmole | A platform that enables scalable and transparent exploration of simulation models using high-throughput computing | 144 |
 marcosimioni/omigood | Automated scanner for detecting vulnerable Linux VMs in Azure environments. | 18 |
 open-mmlab/mmengine | Provides a flexible and configurable framework for training deep learning models with PyTorch. | 1,196 |
 danielmartensson/opensourcelogger | Software for collecting and analyzing measurement data from industrial equipment. | 18 |
 openems/openems | An open-source energy management system platform designed to monitor and control various devices and services related to renewable energy sources | 835 |
 volume-em/empanada | A tool for training and deploying panoptic segmentation models on 2D and 3D images in electron microscopy | 2 |
 choderalab/openmmtools | A toolkit providing tools and methods for simulating molecular systems using the OpenMM engine | 255 |
 vrrenske/bactmap | A package for analyzing and visualizing microscopy data, integrating segmentation tools with Rstats and ggplot2. | 4 |