OpenMicroscopy
Microscopy hub
A collection of resources and projects facilitating collaboration and sharing in the field of microscopy
Non-comprehensive list of projects and resources related to open microscopy.
135 stars
16 watching
28 forks
last commit: about 2 years agoLinked from 1 awesome list
hallvaaw/awesome-biological-image-analysisRelated projects:
| Repository | Description | Stars |
|---|---|---|
 ome/openmicroscopy | Develops software and data format standards for the storage and manipulation of biological microscopy data. | 202 |
 tobetz/legomicroscope | An open-source project providing instructions and resources for building a simple microscope using Lego parts. | 1,001 |
 henriqueslab/zerocostdl4mic | A toolkit for using deep learning in microscopy without requiring extensive coding expertise | 568 |
 zeiss-microscopy/oad | Automating microscopy workflows using Python and Open Application Development tools | 129 |
 pycroscopy/atomai | A PyTorch-based package for analyzing microscopy data with machine learning algorithms | 197 |
 schmollerlab/cell_acdc | A Python framework for analyzing and annotating microscopy data | 138 |
 openlists/otherlists | A curated collection of resources and lists on various topics, including science, coding, neuroscience, and industry. | 5 |
 python-microscopy/python-microscopy | An application suite for light microscopy acquisition, data storage, visualization, and analysis | 85 |
 mozillascience/openguides | A repository providing guides and advice on best practices for working openly in scientific research | 4 |
 meichthys/foss_photo_libraries | A project comparing and tracking features of various photo libraries to help developers find alternatives for their applications. | 2,013 |
 open-science-tools/nd2reader | A software package for reading microscopy images and metadata from NIS Elements files | 45 |
 labsyspharm/mcmicro | An end-to-end microscopy processing pipeline that extracts features from multiplexed whole slide imaging and tissue microarrays using containerized steps. | 115 |
 allencellmodeling/aicsimageio | Provides Python tools for reading, writing and managing microscopy images | 207 |
 opencontainers/.github | Centralized hub for Open Containers Initiative information and project governance | 47 |
 vrrenske/bactmap | A package for analyzing and visualizing microscopy data, integrating segmentation tools with Rstats and ggplot2. | 4 |