openmmtools

Molecular simulator

A toolkit providing tools and methods for simulating molecular systems using the OpenMM engine

A batteries-included toolkit for the GPU-accelerated OpenMM molecular simulation engine.

GitHub

255 stars
37 watching
80 forks
Language: Python
last commit: almost 2 years ago
Linked from 1 awesome list

alchemical-free-energy-calculationsfree-energy-calculationsintegratorsmarkov-chain-monte-carlomcmcmolecular-dynamicsmolecular-simulationsopenmmpythonreplica-exchange

Backlinks from these awesome lists:

Related projects:

RepositoryDescriptionStars
choderalab/persesAn open-source software project exploring chemical space through advanced simulation methods and ensemble techniques.183
choderalab/yankAn open framework for simulating complex chemical reactions on high-performance computing hardware.181
acellera/htmdA programmable platform for automating molecular simulations and data analysis in drug discovery.261
mrchemsoft/mrchemA numerical real-space code for molecular electronic structure calculations.30
lammps/lammpsA parallel molecular dynamics simulation software package2,274
materialsvirtuallab/mamlA toolkit for machine learning in materials science, enabling the development of predictive models and simulations.376
acellera/moleculekitA molecule manipulation library for drug discovery and molecular modeling206
scm-nv/plamsA toolkit for automating molecular simulation workflows and post-processing computational chemistry calculations.67
pcmsolver/pcmsolverAn API for the Polarizable Continuum Model used to simulate molecular interactions in a polarized continuum environment.33
mariewelt/openchemA deep learning toolkit for computational chemistry and drug design research684
open-mmlab/mmengineProvides a flexible and configurable framework for training deep learning models with PyTorch.1,196
alchemistry/alchemlybA Python library providing tools for analyzing data from molecular dynamics simulations200
gromacs/gromacsSoftware toolkit for molecular simulation using C++720
geem-lab/overreactAn in-silico lab for automating quantum chemical microkinetic simulations of complex chemical reactions51
open-atmos/pysdmAn atmospheric modeling package for simulating particle dynamics in moist air using the Super-Droplet Method60