awesome-healthcare

Healthcare toolkit

A curated list of healthcare software and tools for developers to discover and use.

Curated list of awesome open source healthcare software, libraries, tools and resources.

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Awesome Health / Contents / EHR
Akello Integrated Mental Health Infrastructure
Bahmni Electronic Medical Record and hospital system
Cottage Med Electronic Medical Record software designed by physicians
GNU Health Electronic Medical Record, Hospital Management, and Health Information System
GNUmed Electronic Medical Record software
EHRBase OpenEHR Clinical Data Repository
EHRServer 182 almost 2 years ago CaboLabs EHRServer
ERPNext 22,243 about 1 month ago Modules that help manage patients, appointments, consultations, lab tests, and billing
FreeMedForms EMR Electronic Medical Record software
HospitalRun Helps provide the most modern Hospital Information System possible to the least resourced environments
HOSxP Thai Hospital Information System that aims to ease the healthcare workflow of health centers and central hospitals
LibreHealth EHR Clinically-focused Electronic Health Record System
MedinTux French Medical Practice Management System
Medplum 1,434 about 1 month ago Developer platform that enables flexible and rapid development of healthcare apps
Odoo Medical 266 3 months ago Universal Health and Hospital Information System
OpenClinic 32 over 5 years ago Medical Records System
OpenEMR Electronic Health Records and Medical Practice Management application
OpenEyes Electronic Medical Record application for ophthalmology
Open Hospital Electronic Medical Record software for underprivileged rural hospitals
openMAXIMS 65 over 4 years ago Full Patient Administration System designed for the NHS
OpenMRS Enterprise Electronic Medical Record System platform
OSCAR EMR OSCAR McMaster Project
Ozone HIS The entreprise-grade integrated health information system built with OpenMRS 3
Ripple NHS-funded, community led initiative working towards an integrated Digital Care Record Platform

Awesome Health / Contents / Specifications
Continuity of Care Document Continuity of Care Document specifications
DICOM Standards Browser Provides an effective way to learn the DICOM standard and inspect DICOM attributes
FHIR Fast Health Interoperability Resources
HL7 Version 2 Specifications for all versions of HL7v2
OHDSI OMOP Common Data Model Standardized data model for many healthcare concepts, awesome Github presence including scripts for many major relational databases
OpenEHR Open specification upon which software can be built
Open mHealth Open Standard For Mobile Health Data
SMART on FHIR Open standards based technology platform

Awesome Health / Contents / Prescribing
OpenEP 20 over 7 years ago Suite of medicines management apps that improve the safety and efficiency of prescribing and medicines management

Awesome Health / Contents / Nursing
open-eObs Observation and clinical assessment platform that offers a real-time view of all patients across a ward

Awesome Health / Contents / Imaging
3D Slicer Cross-platform application for analyzing, visualizing and understanding medical image data
Cornerstone 2,071 11 months ago Open source project with a goal to deliver a complete web based medical imaging platform
dcm4che Clinical Image and Object Management
Dicoogle 450 about 1 month ago Dicoogle is an extensible, platform-independent and open-source PACS
Drishti 182 about 1 month ago Tomography and electron-microscopy data visualizer for both scientists and lay people
DICOMcloud 218 about 1 year ago A standalone DICOMweb server with RESTful implementation of the DICOMweb/WADO services
DICOM Server 466 about 1 month ago OSS Implementation of DICOMweb standard
DICOM Web Viewer JavaScript/HTML5-based DICOM viewer with standard tools and a focus on supporting various screen sizes
Fiji Open-source platform for biological-image analysis
Horos Medical image viewer
InVesalius Open source software for reconstruction of computed tomography and magnetic ressonance images
ITK Toolkit used for the development of image segmentation and image registration programs with leading-edge algorithms in 2 and 3 dimensions
ITK-SNAP Interactive software for 3 dimensional image navigation, annotation, and automatic segmentation with an emphasis on user-friendliness
LibreHealth Radiology Customized version of LibreHealth Toolkit with additional tools for radiology and imaging professionals
Kaapana 160 about 1 month ago Open source toolkit for state of the art platform provisioning in the field of medical data analysis
Kheops Open source platform for sharing medical images
OHIF 3,391 about 1 month ago OHIF zero-footprint DICOM viewer and oncology specific Lesion Tracker
Omero 202 about 2 months ago open source client/server system written in Java for visualizing, managing, and annotating microscope images and metadata
OpenREM Radiation Exposure Monitoring for physicists
OpenSlide 414 3 months ago is a C library for reading whole slide image files
Orthanc Lightweight DICOM server for healthcare and medical research
Papaya 556 7 months ago Pure JavaScript medical research image viewer
Slim 125 about 1 month ago Interoperable web viewer and annotation tool for computational pathology
Viv 290 about 1 month ago multiscale visualization of high-resolution multiplexed bioimaging data on the web
VTK 3 dimensional visualization toolkit supporting a variety of algorithms and modeling techniques

Awesome Health / Contents / Dental
Open Dental Dental Practice Management Software
OpenMolar Dental Practice Management Software

Awesome Health / Contents / Laboratory
OpenELIS Laboratory Information System for Global Health
SENAITE Laboratory Information Management System

Awesome Health / Contents / Frameworks
API Server 106 over 7 years ago FHIR Server to support patient- and clinician-facing apps
Blaze 158 about 1 month ago A FHIR Store with internal, fast CQL Evaluation Engine
CareKit 2,417 5 months ago Open source software framework for creating apps that help people better understand and manage their health
Clinical Meteor project Meteor for FDA, HIPAA, and HL7 compliant applications
Clinical Quality Language 266 about 1 month ago Clinical Quality Language is a HL7 standard for the expression of clinical knowledge
CyclOps 77 about 1 month ago Framework for healthcare ML implementation
FHIRBase Storage based on the FHIR Standard
FHIR Proxy 73 over 1 year ago secure application that acts as an intermediary in the transfer of FHIR data to and from Azure API
FHIR Works on AWS 298 almost 2 years ago FHIR Works on AWS deployment
FHIR Server for Azure 1,216 about 1 month ago A .NET Core implementation of the FHIR standard
Inferno providing testing tools for the FHIR
Intervention Engine FHIR Server 112 over 3 years ago Generic FHIR server implementation in GoLang
LinuxForHealth FHIR Server 334 9 months ago Modular Java implementation of version 4 of the HL7 FHIR specification
Medblocks UI 54 about 2 months ago Web Components for rapid development of openEHR and FHIR systems
Opal Framework for building clinical applications
ResearchKit 5,618 2 months ago Software framework that makes it easy to create apps for medical research or for other research projects
Spark 260 about 1 month ago Public domain FHIR server developed in C#
Sushi 148 about 1 month ago a reference implementation command-line interpreter/compiler for FHIR
Swift-SMART 135 almost 4 years ago Swift SMART on FHIR framework for iOS and OS X

Awesome Health / Contents / Libraries
Android FHIR SDK 501 about 1 month ago The Android FHIR SDK
Archie 52 about 1 month ago OpenEHR Library written in Java
Asymmetrik FHIR API Server 394 4 months ago A secure REST implementation for the HL7 FHIR Specification
Datamol 476 7 months ago Molecular Manipulation Made Easy. A light Python wrapper build on top of RDKit
DCMTK DICOM Toolkit
dicom 955 about 2 months ago High Performance DICOM Medical Image Parser in GoLang
ehrapy 244 about 1 month ago Electronic Health Record analysis in Python
Evil-DICOM 172 5 months ago C# DICOM Library
Fellow Oak DICOM 1,070 about 1 month ago DICOM for .NET, .NET Core, Universal Windows, Android, iOS, Mono, and Unity
FHIRKit Client 173 about 1 year ago Node FHIR client library
FHIRModels 180 3 months ago FHIRModels is a Swift library for FHIR resource data models
FHIR .NET API 832 about 1 month ago The official .NET API for HL7 FHIR
fhir.js 428 over 1 year ago JavaScript client for FHIR
FHIR protocol buffers 844 about 1 month ago A Google implementation of protocol buffers for FHIR
Graphir 56 5 months ago GraphQL interface over FHIR API
HAPI FHIR 2,057 about 1 month ago Java API for HL7 FHIR Clients and Servers
Hearth 26 about 2 years ago A fast FHIR-compliant server focused on longitudinal data stores
Health data standards 0 about 4 years ago Ruby library for generating and consuming various healthcare related formats. These include HITSP C32, QRDA Category I, and QRDA Category III
Hermes 177 about 1 month ago a SNOMED CT terminology server
Metriport 527 about 1 month ago Open-source universal API for healthcare data
MITK The Medical Imaging Interaction Toolkit
nhs-numbers 7 9 months ago Python package to provide utilities for NHS Numbers, including validity checks, normalisation, and generation
Node HL7 55 over 3 years ago Node module that is bridged with the Java Hapi HL7 library
Node-hl7-parser 47 over 1 year ago Open source version of Redox's HL7 v2 to schema-fied JSON parser
php-fhir 129 about 1 month ago Tools for creating PHP classes from the HL7 FHIR Specification
pynetdicom 515 about 2 months ago A Python implementation of the DICOM networking protocol
Python HL7 288 over 1 year ago Simple library for parsing messages of HL7 version 2.x into Python objects
Python SMART on FHIR client 598 about 2 months ago Flexible Python client for FHIR servers supporting the SMART on FHIR protocol
Python 835 Parser 83 8 months ago A simple-to-use Python interface to EDI 835 Health Care Claim Payment and Remittance Advice files
Ruby FHIR 165 2 months ago FHIR client implementation in Ruby
Ruby HL7 97 over 11 years ago Ruby HL7 library
Rust FHIR 15 about 1 month ago Rust SDK for HL7 FHIR
TorchXRayVision 944 4 months ago A library for chest X-ray datasets and models. Including pre-trained models

Awesome Health / Contents / Applications
Intervention Engine 30 over 7 years ago Provides a web-application for data-driven team huddles
SMART Pediatric Growth Chart 67 11 months ago Pediatric growth charts
Simple For clinicians to track patients with high blood pressure

Awesome Health / Contents / PHR
Fasten Health 1,638 2 months ago open-source, self-hosted, personal/family electronic medical record aggregator
Tidepool Data platform to reduce the burden of Type 1 Diabetes
HealthLocker 73 over 6 years ago Elixir-based personal health record

Awesome Health / Contents / Telemedicine
Healthcare worker at home ​ Open Source Telehealth software

Awesome Health / Contents / Research
i2b2 Research data warehouse
LabKey Server Platform for Translational Research

Awesome Health / Contents / Integration
FHIR Converter 420 about 1 month ago an open source project that enables conversion of health data from legacy formats to FHIR
Google HCLS Data Harmonization 214 about 1 month ago an engine that converts data of one structure to another
NextGen Connect Integration Engine 952 4 months ago The swiss army knife of healthcare integration
Open eHealth Integration Platform 175 about 1 month ago An extension of the Apache Camel routing and mediation engine
OpenHIM Health information mediator
Zato A Python-based ESB and integration platform for healthcare interoperability, automation and orchestration

Awesome Health / Contents / Hardware
Gluco 34 over 8 years ago Glucometer
Murgen Ultrasound imaging development kit
OpenAPS The Open Artificial Pancreas System project is an open and transparent effort to make safe and effective basic Artificial Pancreas System

Awesome Health / Contents / Bioinformatics
ADAM 1,005 about 1 month ago Genomics analysis platform
Bcbio 995 5 months ago Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis
Galaxy Open web-based platform for data intensive biomedical research
Wregex Amino acid motif searching software with optional Position-Specific Scoring Matrix

Awesome Health / Contents / Books
Inspired EHRs 122 almost 4 years ago Ideas, designs, and techniques for designing an Electronic Health Record (EHR)

Awesome Health / Contents / Data
Atlas BI Library 15 about 1 month ago The unified report library
Caisis Oncology research software with a Patient Data Management System
Cedar 8 over 7 years ago Open source tool for testing the strength of Electronic Clinical Quality Measure
cTAKES Natural Language Processing System for extraction of information from Electronic Medical Record clinical free-text
EDS_NLP 117 about 1 month ago provides a set of spaCy components to extract information from clinical notes written in French
eds-scikit 37 7 months ago a tool to assist data scientists working on the AP-HP's Clinical Data Warehouse. It is specifically targeted for OMOP-standardized data
IHRIS Health Information System for management of human resources for health
OpenSAFELY Secure analytics platform for Electronic Health Records in the NHS
Snow Owl 262 about 1 month ago Highly scalable, open source terminology server with revision-control capabilities and collaborative authoring platform features
Synthea Patient Generator 2,213 about 1 month ago Synthetic patient generator that models the medical history of synthetic patients

Awesome Health / Contents / Datasets
Medical Data for Machine Learning 5,844 about 1 year ago Curated list of medical data for machine learning

Awesome Health / Contents / Design
Determinants of Health 78 almost 3 years ago Determinants of Health Visualization
Health Icons 673 about 2 months ago A collection of open source icons for public health projects

Awesome Health / Contents / EMPI
MEDIC Client Registry RI 13 over 1 year ago The Mohawk College MARC-HI/MEDIC Client Registry EMPI Implementation

Awesome Health / Contents / Machine learning
Healthcare.ai Python and R tools for healthcare machine learning
MedicalGPT 3,432 about 1 month ago Training Your Own Medical GPT Model with ChatGPT Training Pipeline
MONAI 5,968 about 1 month ago AI Toolkit for Healthcare Imaging
PyHealth 998 3 months ago A Deep Learning Python Toolkit for Healthcare Application

Awesome Health / Contents / Asset Management
Tapirx 28 over 2 years ago Networked medical device discovery and identification

Awesome Health / Contents / Logistics
ID3C 22 about 1 year ago Data logistics system enabling real-time genomic epidemiology
OpenBoxes 665 about 1 month ago an Open Source Inventory and Supply Chain Management System
OpenLMIS Open source, web-based, electronic logistics management information system (LMIS) software, purpose-built to manage health commodity supply chains

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