scFoundation
Cell analysis tool
Develops a large-scale model to analyze single-cell transcriptomics data and provides tools for downstream tasks such as gene expression enhancement and drug response prediction.
276 stars
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43 forks
Language: Jupyter Notebook
last commit: almost 2 years agoRelated projects:
| Repository | Description | Stars |
|---|---|---|
 yoseflab/scone | Tools for quality control and normalization of single-cell RNA-seq data | 53 |
 kstreet13/bioc2020trajectories | Analyzing and comparing single-cell RNA-seq data across multiple conditions to infer cell trajectories and detect differential expression. | 25 |
 biocorecrg/mop2 | A Nextflow-based workflow for processing and analyzing Oxford Nanopore direct RNA sequencing data | 23 |
 snakemake-workflows/single-cell-rna-seq | A workflow generator for single-cell RNA-seq data analysis | 100 |
 scverse/scvi-tools | Probabilistic analysis tools for single-cell omics data | 1,270 |
 jhu99/scbean | Analyzes single-cell multi-omics data from various modalities like RNA-seq and ATAC-seq | 16 |
 zjufanlab/sccatch | Automated tool for annotating cell types from single-cell RNA sequencing data based on marker genes | 219 |
 cytomining/cytominer | Software for preprocessing and analyzing large cell profiling datasets | 49 |
 evoldoers/biomake | Utility for managing builds and complex workflows in bioinformatics | 103 |
 catavallejos/basics | An integrated Bayesian hierarchical model to analyze single-cell sequencing data | 84 |
 fmicompbio/adv_scrnaseq_2020 | Educational materials and exercises for a course on advanced topics in single-cell transcriptomics | 17 |
 biofam/mofa | A factor analysis model that integrates multi-omics data sets to identify underlying cellular states or disease subgroups. | 233 |
| zjufanlab/scdeepsort | A tool for accurately annotating cell types in single-cell RNA sequencing data using deep learning | 100 |
 timoast/sinto | Tools for analyzing aligned single-cell data from sequencing experiments | 118 |
 biodiverse/spoccupancy | Provides tools for building occupancy models in ecology using Bayesian statistics and spatial modeling. | 53 |