adv_scrnaseq_2020

single-cell transcriptomics tutorials

Educational materials and exercises for a course on advanced topics in single-cell transcriptomics

Material for lectures and exercises of the SIB course "Advanced topics in single-cell transcriptomics" (May 2020)

GitHub

17 stars
8 watching
9 forks
Language: Jupyter Notebook
last commit: over 4 years ago
Linked from 1 awesome list


Backlinks from these awesome lists:

Related projects:

Repository Description Stars
bioinformatics-core-shared-training/univcambridge_scrnaseq_nov2021 An educational resource providing an introduction to single-cell RNA-seq analysis with interactive tutorials and resources. 3
nbisweden/workshop-scrnaseq An educational resource offering interactive R, Python, and Seurat labs for analyzing single-cell RNA sequencing data. 195
theislab/single-cell-tutorial Provides a comprehensive tutorial and workflow for single-cell RNA-seq analysis 1,395
nbisweden/single-cell_sib_scilifelab_2021 An online summer school providing hands-on knowledge on advanced topics in Single Cell Omics analysis 22
sib-swiss/single-cell-training An online course on single-cell transcriptomics using the Seurat pipeline and R 78
hbctraining/scrna-seq_online Teaching materials for a workshop on single-cell RNA-seq data analysis in R 521
imb-computational-genomics-lab/ascend Tools and methods for analyzing single-cell RNA sequencing data, including expression normalization and differential gene expression analysis. 22
cellgeni/scrna.seq.course An educational resource teaching computational analysis of single-cell RNA-seq data using R and Bioconductor tools 123
pachterlab/cwgflhgcchap_2021 Analyzing multiplexed single-cell RNA-seq data from a marine organism, providing tools for preprocessing, clustering, and analysis of gene expression across different cell types. 2
leidencbc/mgc-biosb-singlecellanalysis2021 An online single-cell analysis course with lecture materials, lab exercises, and collaboration tools 6
scverse/scvi-tools Probabilistic analysis tools for single-cell omics data 1,251
yunshun/singlecellworkshop An educational workshop on single-cell RNA-seq analysis using the Seurat R package 0
hemberg-lab/scrna.seq.course An open-source teaching package for the computational analysis of single-cell RNA-seq data using R. 672
iosonofabio/singlet Analyzes single cell RNA sequence data with quantitative phenotypes 13
kstreet13/bioc2020trajectories An R package for comparing multiple conditions in single-cell RNA-seq trajectory inference 25