COMUNET

Cell analysis tool

An exploratory tool for analyzing intercellular communication from single-cell transcriptional data.

COMUNET: a tool to explore and visualize intercellular communication

GitHub

12 stars
4 watching
10 forks
Language: Jupyter Notebook
last commit: over 4 years ago
Linked from 1 awesome list


Backlinks from these awesome lists:

Related projects:

Repository Description Stars
compbel/scifil A computational tool for analyzing single cell sequencing data to infer fitness landscapes of cancer cell populations. 5
jiekailab/scte A tool for analyzing single-cell sequencing data to quantify transposable element expression. 102
cabsel/calista Analyzes single cell expression data to infer cellular lineages and clustering structures 9
cantinilab/scprint An open-source software framework for analyzing single-cell RNA sequencing data and predicting gene networks 22
angelolab/ark-analysis A toolset for analyzing multiplexed imaging data by applying various machine learning and image processing techniques to segment cells, cluster pixels, and perform spatial analysis. 76
martaint/intercellar An interactive R/Shiny app for analyzing cell-cell communication from single-cell transcriptomics data 9
xmc811/scillus A package for processing and visualizing single-cell RNA-seq data in R, providing an efficient and customizable framework for analyzing complex biological datasets. 53
cellgeni/scrna.seq.course An educational resource teaching computational analysis of single-cell RNA-seq data using R and Bioconductor tools 123
asncd/mimosca A tool for designing and analyzing pooled single cell RNA-seq perturbation experiments to understand biological dynamics 86
eiriniar/cellcnn A Python-based software framework for analyzing mass/flow cytometry data to identify phenotype-associated cell subsets. 65
kharchenkolab/numbat Analyzes single-cell RNA-seq data to detect allele-specific copy number variations and infer lineage relationships in cancer cells 166
euxhenh/cellar An interactive software tool for analyzing single-cell omics data 31
robertaboukhalil/ginkgo An analysis tool for single-cell copy-number variation data from sequencing experiments. 47
cbg-ethz/scicone A software tool for analyzing single-cell DNA sequencing data to reconstruct copy number events and cell histories in cancer research. 20
chenmengjie/citrus An R/C++ toolkit for single cell sequencing analysis with normalization and clustering methods 3