bindSC
Multi-omics integrator
A tool for integrating multi-omics data from single cell sequencing technologies to improve analysis accuracy and discovery of biological patterns.
Bi-order integration (in silico multi-omics data) of single cell RNA sequencing, single cell ATAC sequencing, spacial transcriptomics and CyTOF data
34 stars
5 watching
7 forks
Language: R
last commit: over 1 year ago
Linked from 1 awesome list
integrative-analysissingle-cell-analysis
seandavi/awesome-single-cellRelated projects:
| Repository | Description | Stars |
|---|---|---|
 selbouhaddani/omicspls | A tool for integrating and analyzing high-dimensional biological data using partial least squares regression | 32 |
 jhu99/scbean | Analyzes single-cell multi-omics data from various modalities like RNA-seq and ATAC-seq | 16 |
| kchen-lab/medalt | Software for inferring evolutionary lineage of tumor cells from single cell copy number profiles | 17 |
| kchen-lab/scmarker | A tool to identify cell-specific markers from single-cell RNA sequencing data by filtering out genes with unimodal distributions and selecting synergistically expressed gene pairs. | 15 |
 gao-lab/glue | A software framework for integrating multi-omics data from single cells | 388 |
 euxhenh/cellar | An interactive software tool for analyzing single-cell omics data | 32 |
 cancerai-cl/integrativevaes | Designs and builds neural networks to integrate diverse cancer patient data types for accurate diagnosis and clinical applications. | 27 |
 peterzzq/scdart | A deep learning framework designed to integrate multi-modal single cell data from different modalities while preserving cell trajectory structures. | 10 |
 jsxlei/scalex | A tool for integrating single-cell data from heterogeneous sources into a common cell-space using deep learning techniques. | 73 |
| kchen-lab/cytospill | Reduces noise in mass cytometry data by estimating spillover effects without relying on control experiments. | 2 |
| kchen-lab/cyclum | A tool to identify circular trajectories in scRNA-seq data using an autoencoder with sinusoidal activations | 20 |
 cbg-ethz/netics | Tools for integrating multi-omics data to prioritize cancer genes | 15 |
 kharchenkolab/numbat | Analyzes single-cell RNA-seq data to detect allele-specific copy number variations and infer lineage relationships in cancer cells | 171 |
 usc-isi-i2/web-karma | An information integration tool for data modeling and transformation from various data sources into standardized RDF format. | 590 |
 bimsbbioinfo/netsmooth | Improves single cell RNA-seq data by smoothing out noise using prior information from gene interaction networks | 27 |