CytoSpill
Spillover reducer
Reduces noise in mass cytometry data by estimating spillover effects without relying on control experiments.
A statistical approach that reduces spillover noise in the mass cytometry (CyTOF) data
2 stars
2 watching
6 forks
Language: R
last commit: over 5 years agoLinked from 1 awesome list
seandavi/awesome-single-cellRelated projects:
| Repository | Description | Stars |
|---|---|---|
| kchen-lab/medalt | Software for inferring evolutionary lineage of tumor cells from single cell copy number profiles | 17 |
 markrobinsonuzh/cytofworkflow | A pipeline for differential analysis of high-throughput cytometry data | 14 |
 cytomining/cytominer | Software for preprocessing and analyzing large cell profiling datasets | 49 |
| kchen-lab/bindsc | A tool for integrating multi-omics data from single cell sequencing technologies to improve analysis accuracy and discovery of biological patterns. | 34 |
| kchen-lab/cyclum | A tool to identify circular trajectories in scRNA-seq data using an autoencoder with sinusoidal activations | 20 |
 huanglabpurdue/ncs | An algorithm to reduce noise in images from sCMOS cameras | 29 |
| kchen-lab/scmarker | A tool to identify cell-specific markers from single-cell RNA sequencing data by filtering out genes with unimodal distributions and selecting synergistically expressed gene pairs. | 15 |
 kharchenkolab/numbat | Analyzes single-cell RNA-seq data to detect allele-specific copy number variations and infer lineage relationships in cancer cells | 171 |
 bodenmillergroup/histocat | An interactive analysis toolbox for multiplexed image cytometry data | 1 |
 kenlaulab/dropkick | Automated cell filtering tool for single-cell RNA sequencing data analysis | 24 |
 pachterlab/cwgflhgcchap_2021 | Analyzing multiplexed single-cell RNA-seq data from a marine organism, providing tools for preprocessing, clustering, and analysis of gene expression across different cell types. | 2 |
| cytomining/pycytominer | A Python package for processing high-dimensional data from microscopy imaging experiments | 82 |
 aertslab/cistopic | An R package for identifying cell states and cis-regulatory topics from single-cell epigenomics data | 135 |
 qile0317/apackoftheclones | Tools for visualizing and analyzing clonal expansion in immune cell populations | 14 |
| cytomining/cytominer-database | A package for organizing and storing morphological profiling data from microscopy images. | 10 |