OmicsPLS

Data integrator

A tool for integrating and analyzing high-dimensional biological data using partial least squares regression

R package for High dimensional data analysis and integration with O2PLS!

GitHub

32 stars
4 watching
8 forks
Language: R
last commit: about 4 years ago
Linked from 1 awesome list

bioinformaticsbiostatisticsdata-integrationlatent-variable-modelsmulti-omicsomicspartial-least-squares-regressionpcaplsprincipal-component-analysis

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