IARC-nf
by IARCbioinfo
List of IARC bioinformatics nextflow pipelines
AI summary
NGS pipelines
Provides a collection of pre-configured bioinformatics pipelines and tools for analyzing next-generation sequencing data.
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NGS pipeline framework
A collection of Nextflow pipelines for analyzing NGS data from the LGHM bioinformatics lab
Bioinformatics pipelines
A collection of reusable computational pipelines for bioinformatics tasks.
Pipeline
A pipeline for quantifying genomic features from short read data using Nextflow and various software components.
Bioinformatics pipeline project
An initiative to develop and showcase Nextflow-based pipelines for bioinformatics analysis
GVCF generator
Generates GVCF from BAM files using GenomeAnalysisTK with realignment and recalibration steps
Pipeline framework
A collection of reusable modules and sub-workflows for Nextflow pipelines in bioinformatics
RNA pipeline
A pipeline for RNA-Seq analyses using nextflow
RNA sequencing pipeline
A tutorial project on using Nextflow and Docker for implementing a RNA-Seq pipeline
Gene fusion analyzer
A bioinformatics pipeline for detecting and analyzing gene fusions from RNA sequencing data
Genome pipeline
A Nextflow pipeline for running structural variation callers on whole genome sequencing data
Metrics calculator
Tools for computing average metrics from reads overlapping given positions
Variant caller
A Nextflow pipeline for RNA sequencing variant calling with GATK best practices
Pipeline
A Nextflow pipeline script for processing ancient DNA sequencing data.
RNA-seq pipeline
Automated RNA-seq analysis pipeline using Nextflow and Docker/Singularity containers
Pipeline wrapper
Automates the packaging and distribution of bioinformatics pipelines for seamless deployment on various workstations.
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